Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23185

Experiment: carbonsource_succinate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbonsource_succinate
1,112,072	+		AMB_RS05360	0.11	-0.6
1,112,072	+		AMB_RS05360	0.11	-0.9
1,112,073	-		AMB_RS05360	0.11	-0.6
1,112,073	-		AMB_RS05360	0.11	+0.2
1,112,214	+		AMB_RS05360	0.28	-0.3
1,112,214	+		AMB_RS05360	0.28	-0.6
1,112,214	+		AMB_RS05360	0.28	-0.5
1,112,214	+		AMB_RS05360	0.28	+1.3
1,112,215	-		AMB_RS05360	0.28	-1.5
1,112,215	-		AMB_RS05360	0.28	-0.2
1,112,215	-		AMB_RS05360	0.28	+0.3
1,112,215	-		AMB_RS05360	0.28	-0.4
1,112,215	-		AMB_RS05360	0.28	-0.2
1,112,215	-		AMB_RS05360	0.28	+0.3
1,112,225	-		AMB_RS05360	0.29	+0.2
1,112,225	-		AMB_RS05360	0.29	-1.0
1,112,225	-		AMB_RS05360	0.29	-0.6
1,112,228	+		AMB_RS05360	0.30	+0.3
1,112,228	+		AMB_RS05360	0.30	+0.2
1,112,229	-		AMB_RS05360	0.30	-1.7
1,112,229	-		AMB_RS05360	0.30	-0.5
1,112,240	+		AMB_RS05360	0.31	-0.3
1,112,240	+		AMB_RS05360	0.31	-0.1
1,112,240	+		AMB_RS05360	0.31	+0.8
1,112,241	-		AMB_RS05360	0.31	-0.3
1,112,241	-		AMB_RS05360	0.31	-0.2
1,112,252	+		AMB_RS05360	0.33	-0.0
1,112,252	+		AMB_RS05360	0.33	-0.1
1,112,259	-		AMB_RS05360	0.33	+2.5
1,112,259	-		AMB_RS05360	0.33	-0.1
1,112,259	-		AMB_RS05360	0.33	-1.0
1,112,286	-		AMB_RS05360	0.37	-0.3
1,112,477	+		AMB_RS05360	0.59	-0.2
1,112,478	-		AMB_RS05360	0.59	-0.4
1,112,501	+		AMB_RS05360	0.62	-0.1
1,112,501	+		AMB_RS05360	0.62	-2.4
1,112,502	-		AMB_RS05360	0.62	+0.4
1,112,600	+		AMB_RS05360	0.74	-0.1
1,112,600	+		AMB_RS05360	0.74	-0.2
1,112,601	-		AMB_RS05360	0.74	-1.9
1,112,615	+		AMB_RS05360	0.76	-0.5
1,112,615	+		AMB_RS05360	0.76	-0.7
1,112,616	-		AMB_RS05360	0.76	-3.4
1,112,617	+		AMB_RS05360	0.76	+0.3
1,112,617	+		AMB_RS05360	0.76	-0.6
1,112,618	-		AMB_RS05360	0.76	-0.1
1,112,618	-		AMB_RS05360	0.76	+0.3
1,112,661	+		AMB_RS05360	0.81	-0.1
1,112,661	+		AMB_RS05360	0.81	-1.2
1,112,748	+				-1.3
1,112,748	+				-0.2
1,112,749	-				-0.2
1,112,771	+				+0.6
1,112,772	-				-0.2
1,112,772	-				-0.1
1,112,808	-				+0.1
1,112,808	-				+0.1
1,112,870	+				-0.1
1,112,871	-				-0.1
1,112,880	+				+0.2
1,112,881	-				-1.8
1,112,881	-				+0.0
1,112,881	-				-0.5
1,112,881	-				-0.4
1,113,094	+		AMB_RS23185	0.14	-0.4
1,113,094	+		AMB_RS23185	0.14	-0.3
1,113,141	+		AMB_RS23185	0.17	-0.2
1,113,235	+		AMB_RS23185	0.22	+0.1
1,113,367	+		AMB_RS23185	0.28	+0.5
1,113,367	+		AMB_RS23185	0.28	+0.7
1,113,367	+		AMB_RS23185	0.28	-0.6
1,113,367	+		AMB_RS23185	0.28	-1.0
1,113,367	+		AMB_RS23185	0.28	+1.1
1,113,367	+		AMB_RS23185	0.28	-0.3
1,113,368	-		AMB_RS23185	0.28	-0.3
1,113,368	-		AMB_RS23185	0.28	+0.0
1,113,368	-		AMB_RS23185	0.28	-0.2
1,113,368	-		AMB_RS23185	0.28	-0.3
1,113,616	+		AMB_RS23185	0.41	-0.0
1,113,616	+		AMB_RS23185	0.41	-0.3
1,113,616	+		AMB_RS23185	0.41	-0.3
1,113,616	+		AMB_RS23185	0.41	+0.2
1,113,617	-		AMB_RS23185	0.41	-0.3
1,113,617	-		AMB_RS23185	0.41	+0.3
1,113,617	-		AMB_RS23185	0.41	+0.1
1,113,677	+		AMB_RS23185	0.44	-0.4
1,113,677	+		AMB_RS23185	0.44	+0.1
1,113,677	+		AMB_RS23185	0.44	-0.5
1,113,678	-		AMB_RS23185	0.44	-0.7
1,113,772	+		AMB_RS23185	0.49	+0.1
1,113,772	+		AMB_RS23185	0.49	+0.2
1,113,772	+		AMB_RS23185	0.49	-0.4
1,113,773	-		AMB_RS23185	0.49	-0.3
1,113,773	-		AMB_RS23185	0.49	-0.7
1,113,773	-		AMB_RS23185	0.49	-0.1
1,113,773	-		AMB_RS23185	0.49	-0.7
1,113,773	-		AMB_RS23185	0.49	-1.2
1,114,011	+		AMB_RS23185	0.62	-0.3
1,114,011	+		AMB_RS23185	0.62	+0.0
1,114,011	+		AMB_RS23185	0.62	+1.9
1,114,012	-		AMB_RS23185	0.62	+0.2
1,114,024	+		AMB_RS23185	0.62	-0.3
1,114,025	-		AMB_RS23185	0.62	-0.5
1,114,162	+		AMB_RS23185	0.69	-0.1
1,114,162	+		AMB_RS23185	0.69	-1.0
1,114,162	+		AMB_RS23185	0.69	+0.3
1,114,162	+		AMB_RS23185	0.69	+0.4
1,114,162	+		AMB_RS23185	0.69	-0.2
1,114,163	-		AMB_RS23185	0.69	+0.1
1,114,163	-		AMB_RS23185	0.69	-0.5
1,114,163	-		AMB_RS23185	0.69	-1.1
1,114,163	-		AMB_RS23185	0.69	+0.5
1,114,660	+				+0.3
1,114,660	+				-0.7
1,114,661	-				-0.2
1,114,661	-				-0.3
1,114,748	+				-0.7
1,114,783	+				+0.6
1,114,784	-				-0.3
1,114,784	-				-1.1
1,114,839	-				+1.0
1,114,839	-				-1.1
1,114,858	+				-0.3
1,114,858	+				-0.7
1,114,859	-				-1.3
1,114,867	+				-0.3
1,114,867	+				-0.4
1,114,867	+				-0.5
1,114,871	+				+0.3
1,114,950	+				-0.9
1,114,950	+				-0.3
1,114,950	+				-0.9
1,114,950	+				-0.9
1,114,951	-				-0.3
1,114,951	-				-0.5
1,114,981	+				-1.1
1,114,981	+				+0.4
1,114,982	-		AMB_RS05370	0.10	+0.1
1,114,982	-		AMB_RS05370	0.10	-0.7
1,114,982	-		AMB_RS05370	0.10	-0.2
1,114,982	-		AMB_RS05370	0.10	-0.5
1,114,982	-		AMB_RS05370	0.10	-0.3
1,114,982	-		AMB_RS05370	0.10	-0.2
1,115,111	-		AMB_RS05370	0.56	-1.6
1,115,141	-		AMB_RS05370	0.67	+0.3
1,115,141	-		AMB_RS05370	0.67	+0.1
1,115,308	+				+0.3
1,115,308	+				+0.0
1,115,309	-				-0.4
1,115,412	+		AMB_RS05375	0.14	+0.0
1,115,412	+		AMB_RS05375	0.14	+0.3
1,115,422	+		AMB_RS05375	0.17	+0.3
1,115,424	+		AMB_RS05375	0.17	-2.0
1,115,424	+		AMB_RS05375	0.17	-0.4
1,115,424	+		AMB_RS05375	0.17	+0.2
1,115,424	+		AMB_RS05375	0.17	-0.8
1,115,424	+		AMB_RS05375	0.17	+0.3
1,115,424	+		AMB_RS05375	0.17	-0.6
1,115,424	+		AMB_RS05375	0.17	+0.6
1,115,424	+		AMB_RS05375	0.17	+0.3
1,115,425	-		AMB_RS05375	0.18	-0.2
1,115,425	-		AMB_RS05375	0.18	+0.0
1,115,425	-		AMB_RS05375	0.18	-0.2
1,115,425	-		AMB_RS05375	0.18	+0.5
1,115,425	-		AMB_RS05375	0.18	-0.1
1,115,425	-		AMB_RS05375	0.18	-0.4
1,115,425	-		AMB_RS05375	0.18	-0.7
1,115,425	-		AMB_RS05375	0.18	+0.1
1,115,425	-		AMB_RS05375	0.18	+0.7
1,115,425	-		AMB_RS05375	0.18	-0.3
1,115,428	+		AMB_RS05375	0.18	-0.0
1,115,428	+		AMB_RS05375	0.18	-0.2
1,115,429	-		AMB_RS05375	0.19	+0.1
1,115,429	-		AMB_RS05375	0.19	+0.0
1,115,429	-		AMB_RS05375	0.19	-0.9
1,115,457	+		AMB_RS05375	0.26	-0.3
1,115,458	-		AMB_RS05375	0.27	-0.2
1,115,499	+		AMB_RS05375	0.38	-0.3
1,115,499	+		AMB_RS05375	0.38	-0.2
1,115,500	-		AMB_RS05375	0.38	-0.7
1,115,500	-		AMB_RS05375	0.38	-0.0
1,115,500	-		AMB_RS05375	0.38	+1.3
1,115,518	+		AMB_RS05375	0.43	+0.5
1,115,518	+		AMB_RS05375	0.43	-0.1
1,115,518	+		AMB_RS05375	0.43	-1.1
1,115,518	+		AMB_RS05375	0.43	-0.2
1,115,567	+		AMB_RS05375	0.56	-0.4
1,115,567	+		AMB_RS05375	0.56	-1.1
1,115,567	+		AMB_RS05375	0.56	-1.0
1,115,568	-		AMB_RS05375	0.56	-0.5
1,115,577	+		AMB_RS05375	0.59	-0.5
1,115,577	+		AMB_RS05375	0.59	-0.7
1,115,578	-		AMB_RS05375	0.59	-0.4
1,115,578	-		AMB_RS05375	0.59	+0.7