Experiment: carbonsource_succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22590 and AMB_RS22595 overlap by 4 nucleotides AMB_RS22595 and AMB_RS22600 are separated by 6 nucleotides AMB_RS22600 and AMB_RS22605 overlap by 4 nucleotides
AMB_RS22590: AMB_RS22590 - PhoH family protein, at 4,874,838 to 4,875,818
_RS22590
AMB_RS22595: AMB_RS22595 - endoribonuclease YbeY, at 4,875,815 to 4,876,309
_RS22595
AMB_RS22600: AMB_RS22600 - HlyC/CorC family transporter, at 4,876,316 to 4,877,281
_RS22600
AMB_RS22605: AMB_RS22605 - apolipoprotein N-acyltransferase, at 4,877,278 to 4,878,696
_RS22605
Position (kb) 4876
4877
4878 Strain fitness (log2 ratio) -2
-1
0
1 at 4875.396 kb on + strand, within AMB_RS22590 at 4875.396 kb on + strand, within AMB_RS22590 at 4875.397 kb on - strand, within AMB_RS22590 at 4875.397 kb on - strand, within AMB_RS22590 at 4875.401 kb on - strand, within AMB_RS22590 at 4875.401 kb on - strand, within AMB_RS22590 at 4875.401 kb on - strand, within AMB_RS22590 at 4875.401 kb on - strand, within AMB_RS22590 at 4875.401 kb on - strand, within AMB_RS22590 at 4875.424 kb on - strand, within AMB_RS22590 at 4875.771 kb on + strand at 4875.772 kb on - strand at 4875.772 kb on - strand at 4875.828 kb on + strand at 4875.828 kb on + strand at 4875.828 kb on + strand at 4876.295 kb on + strand at 4876.307 kb on + strand at 4876.307 kb on + strand at 4876.307 kb on + strand at 4876.333 kb on + strand at 4876.712 kb on + strand, within AMB_RS22600 at 4876.907 kb on + strand, within AMB_RS22600
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_succinate remove 4,875,396 + AMB_RS22590 0.57 -0.1 4,875,396 + AMB_RS22590 0.57 -0.1 4,875,397 - AMB_RS22590 0.57 -0.1 4,875,397 - AMB_RS22590 0.57 +0.3 4,875,401 - AMB_RS22590 0.57 -1.0 4,875,401 - AMB_RS22590 0.57 -1.4 4,875,401 - AMB_RS22590 0.57 -0.0 4,875,401 - AMB_RS22590 0.57 -0.6 4,875,401 - AMB_RS22590 0.57 -0.4 4,875,424 - AMB_RS22590 0.60 +0.1 4,875,771 + -1.3 4,875,772 - -0.6 4,875,772 - -1.4 4,875,828 + +0.9 4,875,828 + +1.2 4,875,828 + -0.2 4,876,295 + +0.8 4,876,307 + -1.9 4,876,307 + -0.9 4,876,307 + -1.7 4,876,333 + -2.0 4,876,712 + AMB_RS22600 0.41 +0.1 4,876,907 + AMB_RS22600 0.61 -1.7
Or see this region's nucleotide sequence