Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22360

Experiment: carbonsource_succinate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS22355 and AMB_RS22360 are separated by 88 nucleotidesAMB_RS22360 and AMB_RS22365 are separated by 3 nucleotidesAMB_RS22365 and AMB_RS22370 overlap by 4 nucleotides AMB_RS22355: AMB_RS22355 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 4,825,837 to 4,826,880 _RS22355 AMB_RS22360: AMB_RS22360 - hydroxymethylbilane synthase, at 4,826,969 to 4,827,916 _RS22360 AMB_RS22365: AMB_RS22365 - uroporphyrinogen-III synthase, at 4,827,920 to 4,828,648 _RS22365 AMB_RS22370: AMB_RS22370 - hypothetical protein, at 4,828,645 to 4,829,661 _RS22370 Position (kb) 4826 4827 4828Strain fitness (log2 ratio) -2 -1 0 1at 4826.884 kb on - strandat 4826.951 kb on + strandat 4826.951 kb on + strandat 4826.951 kb on + strandat 4826.951 kb on + strandat 4826.954 kb on + strandat 4826.954 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
remove
4,826,884 - -2.5
4,826,951 + -1.3
4,826,951 + +0.3
4,826,951 + -0.5
4,826,951 + -1.4
4,826,954 + -2.7
4,826,954 + +1.7

Or see this region's nucleotide sequence