Experiment: carbonsource_succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS24700 and AMB_RS24705 are separated by 83 nucleotides AMB_RS24705 and AMB_RS20510 are separated by 39 nucleotides AMB_RS20510 and AMB_RS20515 are separated by 1 nucleotides
AMB_RS24700: AMB_RS24700 - hypothetical protein, at 4,454,186 to 4,454,935
_RS24700
AMB_RS24705: AMB_RS24705 - hypothetical protein, at 4,455,019 to 4,455,216
_RS24705
AMB_RS20510: AMB_RS20510 - HlyD family type I secretion periplasmic adaptor subunit, at 4,455,256 to 4,456,641
_RS20510
AMB_RS20515: AMB_RS20515 - ABC protease/lipase transporter ATPase/permease, at 4,456,643 to 4,458,661
_RS20515
Position (kb) 4455
4456
4457 Strain fitness (log2 ratio) -2
-1
0
1 at 4454.355 kb on + strand, within AMB_RS24700 at 4454.356 kb on - strand, within AMB_RS24700 at 4454.379 kb on + strand, within AMB_RS24700 at 4454.379 kb on + strand, within AMB_RS24700 at 4454.379 kb on + strand, within AMB_RS24700 at 4454.379 kb on + strand, within AMB_RS24700 at 4454.379 kb on + strand, within AMB_RS24700 at 4454.380 kb on - strand, within AMB_RS24700 at 4454.457 kb on + strand, within AMB_RS24700 at 4454.933 kb on + strand at 4454.933 kb on + strand at 4454.934 kb on - strand at 4455.366 kb on + strand at 4455.367 kb on - strand at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.488 kb on + strand, within AMB_RS20510 at 4455.489 kb on - strand, within AMB_RS20510 at 4455.489 kb on - strand, within AMB_RS20510 at 4455.489 kb on - strand, within AMB_RS20510 at 4455.489 kb on - strand, within AMB_RS20510 at 4455.489 kb on - strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.491 kb on + strand, within AMB_RS20510 at 4455.492 kb on - strand, within AMB_RS20510 at 4455.492 kb on - strand, within AMB_RS20510 at 4455.492 kb on - strand, within AMB_RS20510 at 4455.492 kb on - strand, within AMB_RS20510 at 4455.584 kb on + strand, within AMB_RS20510 at 4455.585 kb on - strand, within AMB_RS20510 at 4455.585 kb on - strand, within AMB_RS20510 at 4455.700 kb on - strand, within AMB_RS20510 at 4456.031 kb on + strand, within AMB_RS20510 at 4456.031 kb on + strand, within AMB_RS20510 at 4456.032 kb on - strand, within AMB_RS20510 at 4456.032 kb on - strand, within AMB_RS20510 at 4456.032 kb on - strand, within AMB_RS20510 at 4457.061 kb on + strand, within AMB_RS20515 at 4457.062 kb on - strand, within AMB_RS20515 at 4457.470 kb on + strand, within AMB_RS20515 at 4457.471 kb on - strand, within AMB_RS20515 at 4457.471 kb on - strand, within AMB_RS20515 at 4457.471 kb on - strand, within AMB_RS20515 at 4457.587 kb on + strand, within AMB_RS20515 at 4457.587 kb on + strand, within AMB_RS20515 at 4457.587 kb on + strand, within AMB_RS20515 at 4457.587 kb on + strand, within AMB_RS20515
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_succinate remove 4,454,355 + AMB_RS24700 0.23 +0.1 4,454,356 - AMB_RS24700 0.23 -1.1 4,454,379 + AMB_RS24700 0.26 -0.3 4,454,379 + AMB_RS24700 0.26 -0.1 4,454,379 + AMB_RS24700 0.26 +0.4 4,454,379 + AMB_RS24700 0.26 +0.4 4,454,379 + AMB_RS24700 0.26 -0.1 4,454,380 - AMB_RS24700 0.26 -0.2 4,454,457 + AMB_RS24700 0.36 -0.1 4,454,933 + +0.3 4,454,933 + -0.5 4,454,934 - -2.2 4,455,366 + -0.1 4,455,367 - +0.3 4,455,488 + AMB_RS20510 0.17 -1.0 4,455,488 + AMB_RS20510 0.17 -0.7 4,455,488 + AMB_RS20510 0.17 +1.0 4,455,488 + AMB_RS20510 0.17 +0.7 4,455,488 + AMB_RS20510 0.17 +0.2 4,455,488 + AMB_RS20510 0.17 -1.4 4,455,488 + AMB_RS20510 0.17 -0.1 4,455,488 + AMB_RS20510 0.17 +0.6 4,455,488 + AMB_RS20510 0.17 -0.3 4,455,488 + AMB_RS20510 0.17 -0.2 4,455,489 - AMB_RS20510 0.17 +0.0 4,455,489 - AMB_RS20510 0.17 -2.0 4,455,489 - AMB_RS20510 0.17 -0.7 4,455,489 - AMB_RS20510 0.17 -0.7 4,455,489 - AMB_RS20510 0.17 -0.2 4,455,491 + AMB_RS20510 0.17 +0.1 4,455,491 + AMB_RS20510 0.17 -0.7 4,455,491 + AMB_RS20510 0.17 -0.4 4,455,491 + AMB_RS20510 0.17 -0.2 4,455,491 + AMB_RS20510 0.17 -0.7 4,455,491 + AMB_RS20510 0.17 +0.6 4,455,491 + AMB_RS20510 0.17 -1.2 4,455,492 - AMB_RS20510 0.17 -0.2 4,455,492 - AMB_RS20510 0.17 -0.7 4,455,492 - AMB_RS20510 0.17 +0.3 4,455,492 - AMB_RS20510 0.17 +0.3 4,455,584 + AMB_RS20510 0.24 +0.3 4,455,585 - AMB_RS20510 0.24 -0.2 4,455,585 - AMB_RS20510 0.24 -0.4 4,455,700 - AMB_RS20510 0.32 -0.4 4,456,031 + AMB_RS20510 0.56 -0.7 4,456,031 + AMB_RS20510 0.56 -0.0 4,456,032 - AMB_RS20510 0.56 -0.1 4,456,032 - AMB_RS20510 0.56 -0.9 4,456,032 - AMB_RS20510 0.56 +0.3 4,457,061 + AMB_RS20515 0.21 -0.1 4,457,062 - AMB_RS20515 0.21 +0.7 4,457,470 + AMB_RS20515 0.41 -1.2 4,457,471 - AMB_RS20515 0.41 -0.5 4,457,471 - AMB_RS20515 0.41 -1.8 4,457,471 - AMB_RS20515 0.41 -0.2 4,457,587 + AMB_RS20515 0.47 +1.0 4,457,587 + AMB_RS20515 0.47 +1.3 4,457,587 + AMB_RS20515 0.47 -0.2 4,457,587 + AMB_RS20515 0.47 -0.4
Or see this region's nucleotide sequence