Experiment: carbonsource_succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20135 and AMB_RS20140 are separated by 26 nucleotides AMB_RS20140 and AMB_RS20145 are separated by 97 nucleotides AMB_RS20145 and AMB_RS20150 are separated by 23 nucleotides AMB_RS20150 and AMB_RS20155 are separated by 76 nucleotides AMB_RS20155 and AMB_RS20160 are separated by 71 nucleotides
AMB_RS20135: AMB_RS20135 - GAF domain-containing protein, at 4,389,411 to 4,389,959
_RS20135
AMB_RS20140: AMB_RS20140 - gamma-glutamylcyclotransferase, at 4,389,986 to 4,390,453
_RS20140
AMB_RS20145: AMB_RS20145 - chromosome segregation ATPase, at 4,390,551 to 4,394,015
_RS20145
AMB_RS20150: AMB_RS20150 - protein disulfide-isomerase, at 4,394,039 to 4,394,644
_RS20150
AMB_RS20155: AMB_RS20155 - hypothetical protein, at 4,394,721 to 4,394,915
_RS20155
AMB_RS20160: AMB_RS20160 - DUF721 domain-containing protein, at 4,394,987 to 4,395,514
_RS20160
Position (kb) 4390
4391
4392
4393
4394
4395 Strain fitness (log2 ratio) -2
-1
0
1 at 4389.574 kb on + strand, within AMB_RS20135 at 4389.574 kb on + strand, within AMB_RS20135 at 4389.574 kb on + strand, within AMB_RS20135 at 4389.574 kb on + strand, within AMB_RS20135 at 4389.574 kb on + strand, within AMB_RS20135 at 4389.574 kb on + strand, within AMB_RS20135 at 4389.575 kb on - strand, within AMB_RS20135 at 4389.575 kb on - strand, within AMB_RS20135 at 4389.575 kb on - strand, within AMB_RS20135 at 4389.575 kb on - strand, within AMB_RS20135 at 4389.575 kb on - strand, within AMB_RS20135 at 4389.575 kb on - strand, within AMB_RS20135 at 4389.588 kb on + strand, within AMB_RS20135 at 4389.668 kb on + strand, within AMB_RS20135 at 4389.668 kb on + strand, within AMB_RS20135 at 4389.759 kb on + strand, within AMB_RS20135 at 4389.876 kb on - strand, within AMB_RS20135 at 4389.930 kb on - strand at 4389.972 kb on + strand at 4390.166 kb on + strand, within AMB_RS20140 at 4390.166 kb on + strand, within AMB_RS20140 at 4390.167 kb on - strand, within AMB_RS20140 at 4390.167 kb on - strand, within AMB_RS20140 at 4390.200 kb on + strand, within AMB_RS20140 at 4390.201 kb on - strand, within AMB_RS20140 at 4390.257 kb on - strand, within AMB_RS20140 at 4390.257 kb on - strand, within AMB_RS20140 at 4390.331 kb on + strand, within AMB_RS20140 at 4390.331 kb on + strand, within AMB_RS20140 at 4390.331 kb on + strand, within AMB_RS20140 at 4390.331 kb on + strand, within AMB_RS20140 at 4390.332 kb on - strand, within AMB_RS20140 at 4390.332 kb on - strand, within AMB_RS20140 at 4390.332 kb on - strand, within AMB_RS20140 at 4390.332 kb on - strand, within AMB_RS20140 at 4390.332 kb on - strand, within AMB_RS20140 at 4390.332 kb on - strand, within AMB_RS20140 at 4390.432 kb on - strand at 4390.432 kb on - strand at 4390.451 kb on + strand at 4390.452 kb on - strand at 4390.516 kb on + strand at 4390.516 kb on + strand at 4390.517 kb on - strand at 4390.517 kb on - strand at 4390.526 kb on + strand at 4390.526 kb on + strand at 4390.526 kb on + strand at 4390.526 kb on + strand at 4390.526 kb on + strand at 4390.526 kb on + strand at 4390.526 kb on + strand at 4390.526 kb on + strand at 4390.527 kb on - strand at 4390.527 kb on - strand at 4390.527 kb on - strand at 4390.642 kb on + strand at 4392.163 kb on + strand, within AMB_RS20145 at 4392.164 kb on - strand, within AMB_RS20145 at 4393.315 kb on + strand, within AMB_RS20145 at 4393.316 kb on - strand, within AMB_RS20145 at 4394.041 kb on - strand at 4394.041 kb on - strand at 4394.041 kb on - strand at 4394.406 kb on + strand, within AMB_RS20150 at 4394.632 kb on - strand at 4394.683 kb on - strand at 4394.686 kb on - strand at 4394.686 kb on - strand at 4394.725 kb on + strand at 4394.725 kb on + strand at 4394.725 kb on + strand at 4394.726 kb on - strand at 4394.726 kb on - strand at 4394.726 kb on - strand at 4394.861 kb on - strand, within AMB_RS20155 at 4394.953 kb on + strand at 4394.953 kb on + strand at 4394.953 kb on + strand at 4394.953 kb on + strand at 4394.953 kb on + strand at 4394.954 kb on - strand at 4394.954 kb on - strand at 4394.954 kb on - strand at 4394.954 kb on - strand at 4394.954 kb on - strand at 4394.954 kb on - strand at 4394.954 kb on - strand at 4394.954 kb on - strand at 4394.954 kb on - strand at 4394.955 kb on + strand at 4394.956 kb on - strand at 4394.956 kb on - strand at 4394.956 kb on - strand at 4394.956 kb on - strand at 4394.956 kb on - strand at 4394.968 kb on + strand at 4394.968 kb on + strand at 4394.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_succinate remove 4,389,574 + AMB_RS20135 0.30 -0.2 4,389,574 + AMB_RS20135 0.30 -0.2 4,389,574 + AMB_RS20135 0.30 -0.6 4,389,574 + AMB_RS20135 0.30 +0.4 4,389,574 + AMB_RS20135 0.30 +0.3 4,389,574 + AMB_RS20135 0.30 -1.1 4,389,575 - AMB_RS20135 0.30 -0.9 4,389,575 - AMB_RS20135 0.30 -1.9 4,389,575 - AMB_RS20135 0.30 -0.5 4,389,575 - AMB_RS20135 0.30 -0.3 4,389,575 - AMB_RS20135 0.30 -2.0 4,389,575 - AMB_RS20135 0.30 -0.4 4,389,588 + AMB_RS20135 0.32 -0.5 4,389,668 + AMB_RS20135 0.47 -0.9 4,389,668 + AMB_RS20135 0.47 -0.4 4,389,759 + AMB_RS20135 0.63 -0.5 4,389,876 - AMB_RS20135 0.85 -0.4 4,389,930 - +0.3 4,389,972 + -1.0 4,390,166 + AMB_RS20140 0.38 -0.6 4,390,166 + AMB_RS20140 0.38 -0.2 4,390,167 - AMB_RS20140 0.39 -0.1 4,390,167 - AMB_RS20140 0.39 -0.5 4,390,200 + AMB_RS20140 0.46 -0.3 4,390,201 - AMB_RS20140 0.46 -0.3 4,390,257 - AMB_RS20140 0.58 -1.0 4,390,257 - AMB_RS20140 0.58 -0.9 4,390,331 + AMB_RS20140 0.74 -0.3 4,390,331 + AMB_RS20140 0.74 +0.1 4,390,331 + AMB_RS20140 0.74 +0.2 4,390,331 + AMB_RS20140 0.74 +0.5 4,390,332 - AMB_RS20140 0.74 -0.4 4,390,332 - AMB_RS20140 0.74 -0.4 4,390,332 - AMB_RS20140 0.74 -0.3 4,390,332 - AMB_RS20140 0.74 -0.3 4,390,332 - AMB_RS20140 0.74 -0.4 4,390,332 - AMB_RS20140 0.74 -0.5 4,390,432 - +1.6 4,390,432 - -0.8 4,390,451 + -0.3 4,390,452 - -0.4 4,390,516 + +0.3 4,390,516 + -0.4 4,390,517 - -0.4 4,390,517 - -0.6 4,390,526 + -0.2 4,390,526 + -1.3 4,390,526 + -0.3 4,390,526 + -2.5 4,390,526 + -1.5 4,390,526 + +0.2 4,390,526 + -0.2 4,390,526 + +0.5 4,390,527 - -0.1 4,390,527 - +1.1 4,390,527 - -0.2 4,390,642 + -0.2 4,392,163 + AMB_RS20145 0.47 +0.3 4,392,164 - AMB_RS20145 0.47 -0.3 4,393,315 + AMB_RS20145 0.80 +0.1 4,393,316 - AMB_RS20145 0.80 -0.4 4,394,041 - -0.3 4,394,041 - -1.2 4,394,041 - -0.1 4,394,406 + AMB_RS20150 0.61 -0.1 4,394,632 - -2.0 4,394,683 - -0.3 4,394,686 - -1.3 4,394,686 - +0.0 4,394,725 + +1.4 4,394,725 + -0.4 4,394,725 + +0.0 4,394,726 - +0.3 4,394,726 - -1.0 4,394,726 - -1.2 4,394,861 - AMB_RS20155 0.72 -0.7 4,394,953 + -0.1 4,394,953 + -0.4 4,394,953 + -0.9 4,394,953 + -0.3 4,394,953 + -1.2 4,394,954 - +0.5 4,394,954 - +0.1 4,394,954 - -1.1 4,394,954 - +0.6 4,394,954 - +0.3 4,394,954 - +0.3 4,394,954 - -2.0 4,394,954 - -0.3 4,394,954 - +0.1 4,394,955 + +0.1 4,394,956 - -1.0 4,394,956 - -0.2 4,394,956 - -1.3 4,394,956 - +0.5 4,394,956 - -0.1 4,394,968 + -0.2 4,394,968 + -0.1 4,394,980 - -0.1
Or see this region's nucleotide sequence