Experiment: carbonsource_succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19825 and AMB_RS19830 are separated by 58 nucleotides AMB_RS19830 and AMB_RS19835 are separated by 73 nucleotides AMB_RS19835 and AMB_RS19840 are separated by 110 nucleotides AMB_RS19840 and AMB_RS19845 are separated by 10 nucleotides
AMB_RS19825: AMB_RS19825 - signal transduction histidine kinase, at 4,330,599 to 4,332,242
_RS19825
AMB_RS19830: AMB_RS19830 - molybdopterin adenylyltransferase, at 4,332,301 to 4,332,837
_RS19830
AMB_RS19835: AMB_RS19835 - YbjQ family protein, at 4,332,911 to 4,333,234
_RS19835
AMB_RS19840: AMB_RS19840 - hypothetical protein, at 4,333,345 to 4,334,004
_RS19840
AMB_RS19845: AMB_RS19845 - hypothetical protein, at 4,334,015 to 4,334,362
_RS19845
Position (kb) 4332
4333
4334 Strain fitness (log2 ratio) -1
0
1
2 at 4332.302 kb on + strand at 4332.302 kb on + strand at 4332.303 kb on - strand at 4332.303 kb on - strand at 4332.960 kb on - strand, within AMB_RS19835 at 4333.058 kb on + strand, within AMB_RS19835 at 4333.058 kb on + strand, within AMB_RS19835 at 4333.059 kb on - strand, within AMB_RS19835 at 4333.059 kb on - strand, within AMB_RS19835 at 4333.160 kb on + strand, within AMB_RS19835 at 4333.323 kb on + strand at 4333.699 kb on + strand, within AMB_RS19840 at 4333.699 kb on + strand, within AMB_RS19840 at 4333.699 kb on + strand, within AMB_RS19840 at 4333.699 kb on + strand, within AMB_RS19840 at 4333.700 kb on - strand, within AMB_RS19840 at 4333.700 kb on - strand, within AMB_RS19840 at 4333.700 kb on - strand, within AMB_RS19840 at 4333.700 kb on - strand, within AMB_RS19840 at 4333.701 kb on + strand, within AMB_RS19840 at 4333.701 kb on + strand, within AMB_RS19840 at 4333.702 kb on - strand, within AMB_RS19840 at 4334.213 kb on + strand, within AMB_RS19845 at 4334.213 kb on + strand, within AMB_RS19845 at 4334.213 kb on + strand, within AMB_RS19845 at 4334.214 kb on - strand, within AMB_RS19845 at 4334.214 kb on - strand, within AMB_RS19845 at 4334.214 kb on - strand, within AMB_RS19845 at 4334.214 kb on - strand, within AMB_RS19845 at 4334.214 kb on - strand, within AMB_RS19845
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_succinate remove 4,332,302 + -0.1 4,332,302 + -1.1 4,332,303 - -0.6 4,332,303 - +0.4 4,332,960 - AMB_RS19835 0.15 -1.1 4,333,058 + AMB_RS19835 0.45 -0.2 4,333,058 + AMB_RS19835 0.45 +0.6 4,333,059 - AMB_RS19835 0.46 -0.2 4,333,059 - AMB_RS19835 0.46 +0.6 4,333,160 + AMB_RS19835 0.77 -0.7 4,333,323 + +0.8 4,333,699 + AMB_RS19840 0.54 -1.3 4,333,699 + AMB_RS19840 0.54 +0.6 4,333,699 + AMB_RS19840 0.54 -0.8 4,333,699 + AMB_RS19840 0.54 -0.3 4,333,700 - AMB_RS19840 0.54 -0.7 4,333,700 - AMB_RS19840 0.54 -1.0 4,333,700 - AMB_RS19840 0.54 -1.2 4,333,700 - AMB_RS19840 0.54 -0.4 4,333,701 + AMB_RS19840 0.54 +0.0 4,333,701 + AMB_RS19840 0.54 -0.1 4,333,702 - AMB_RS19840 0.54 -0.1 4,334,213 + AMB_RS19845 0.57 -0.3 4,334,213 + AMB_RS19845 0.57 +0.1 4,334,213 + AMB_RS19845 0.57 -0.5 4,334,214 - AMB_RS19845 0.57 +0.5 4,334,214 - AMB_RS19845 0.57 -1.5 4,334,214 - AMB_RS19845 0.57 -0.1 4,334,214 - AMB_RS19845 0.57 -0.4 4,334,214 - AMB_RS19845 0.57 +2.4
Or see this region's nucleotide sequence