Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14935

Experiment: carbonsource_succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14930 and AMB_RS14935 overlap by 4 nucleotidesAMB_RS14935 and AMB_RS14940 are separated by 29 nucleotides AMB_RS14930: AMB_RS14930 - hypothetical protein, at 3,188,432 to 3,194,227 _RS14930 AMB_RS14935: AMB_RS14935 - hypothetical protein, at 3,194,224 to 3,197,919 _RS14935 AMB_RS14940: AMB_RS14940 - hypothetical protein, at 3,197,949 to 3,199,439 _RS14940 Position (kb) 3194 3195 3196 3197 3198Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3193.260 kb on + strand, within AMB_RS14930at 3193.261 kb on - strand, within AMB_RS14930at 3193.261 kb on - strand, within AMB_RS14930at 3193.455 kb on + strand, within AMB_RS14930at 3193.455 kb on + strand, within AMB_RS14930at 3193.455 kb on + strand, within AMB_RS14930at 3193.455 kb on + strand, within AMB_RS14930at 3193.455 kb on + strand, within AMB_RS14930at 3193.588 kb on + strand, within AMB_RS14930at 3193.641 kb on + strand, within AMB_RS14930at 3193.641 kb on + strand, within AMB_RS14930at 3193.641 kb on + strand, within AMB_RS14930at 3193.641 kb on + strand, within AMB_RS14930at 3193.641 kb on + strand, within AMB_RS14930at 3193.641 kb on + strand, within AMB_RS14930at 3193.641 kb on + strand, within AMB_RS14930at 3193.641 kb on + strand, within AMB_RS14930at 3193.641 kb on + strand, within AMB_RS14930at 3193.641 kb on + strand, within AMB_RS14930at 3193.642 kb on - strand, within AMB_RS14930at 3193.642 kb on - strand, within AMB_RS14930at 3193.642 kb on - strand, within AMB_RS14930at 3193.642 kb on - strand, within AMB_RS14930at 3193.642 kb on - strand, within AMB_RS14930at 3193.642 kb on - strand, within AMB_RS14930at 3193.642 kb on - strand, within AMB_RS14930at 3193.642 kb on - strand, within AMB_RS14930at 3193.642 kb on - strand, within AMB_RS14930at 3193.642 kb on - strand, within AMB_RS14930at 3193.642 kb on - strand, within AMB_RS14930at 3194.095 kb on + strandat 3194.096 kb on - strandat 3194.147 kb on - strandat 3194.147 kb on - strandat 3194.268 kb on - strandat 3194.268 kb on - strandat 3194.378 kb on + strandat 3194.378 kb on + strandat 3195.164 kb on + strand, within AMB_RS14935at 3195.164 kb on + strand, within AMB_RS14935at 3195.164 kb on + strand, within AMB_RS14935at 3195.165 kb on - strand, within AMB_RS14935at 3195.165 kb on - strand, within AMB_RS14935at 3195.165 kb on - strand, within AMB_RS14935at 3195.165 kb on - strand, within AMB_RS14935at 3195.427 kb on + strand, within AMB_RS14935at 3195.428 kb on - strand, within AMB_RS14935at 3196.367 kb on + strand, within AMB_RS14935at 3196.367 kb on + strand, within AMB_RS14935at 3196.367 kb on + strand, within AMB_RS14935at 3196.487 kb on + strand, within AMB_RS14935at 3196.488 kb on - strand, within AMB_RS14935at 3196.601 kb on + strand, within AMB_RS14935at 3196.601 kb on + strand, within AMB_RS14935at 3196.601 kb on + strand, within AMB_RS14935at 3196.601 kb on + strand, within AMB_RS14935at 3196.601 kb on + strand, within AMB_RS14935at 3196.601 kb on + strand, within AMB_RS14935at 3196.602 kb on - strand, within AMB_RS14935at 3196.647 kb on - strand, within AMB_RS14935at 3196.674 kb on - strand, within AMB_RS14935at 3197.117 kb on + strand, within AMB_RS14935at 3197.117 kb on + strand, within AMB_RS14935at 3197.276 kb on + strand, within AMB_RS14935at 3197.277 kb on - strand, within AMB_RS14935at 3197.852 kb on + strandat 3197.853 kb on - strandat 3198.148 kb on + strand, within AMB_RS14940at 3198.148 kb on + strand, within AMB_RS14940at 3198.148 kb on + strand, within AMB_RS14940at 3198.148 kb on + strand, within AMB_RS14940at 3198.149 kb on - strand, within AMB_RS14940at 3198.149 kb on - strand, within AMB_RS14940at 3198.149 kb on - strand, within AMB_RS14940at 3198.225 kb on + strand, within AMB_RS14940at 3198.319 kb on + strand, within AMB_RS14940at 3198.319 kb on + strand, within AMB_RS14940at 3198.319 kb on + strand, within AMB_RS14940at 3198.319 kb on + strand, within AMB_RS14940at 3198.320 kb on - strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.341 kb on + strand, within AMB_RS14940at 3198.342 kb on - strand, within AMB_RS14940at 3198.342 kb on - strand, within AMB_RS14940at 3198.342 kb on - strand, within AMB_RS14940at 3198.343 kb on + strand, within AMB_RS14940at 3198.343 kb on + strand, within AMB_RS14940at 3198.344 kb on - strand, within AMB_RS14940at 3198.361 kb on + strand, within AMB_RS14940at 3198.361 kb on + strand, within AMB_RS14940at 3198.362 kb on - strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.376 kb on + strand, within AMB_RS14940at 3198.377 kb on - strand, within AMB_RS14940at 3198.377 kb on - strand, within AMB_RS14940at 3198.377 kb on - strand, within AMB_RS14940at 3198.377 kb on - strand, within AMB_RS14940at 3198.511 kb on + strand, within AMB_RS14940at 3198.566 kb on - strand, within AMB_RS14940at 3198.566 kb on - strand, within AMB_RS14940at 3198.718 kb on + strand, within AMB_RS14940at 3198.718 kb on + strand, within AMB_RS14940at 3198.719 kb on - strand, within AMB_RS14940at 3198.719 kb on - strand, within AMB_RS14940at 3198.733 kb on + strand, within AMB_RS14940at 3198.734 kb on - strand, within AMB_RS14940at 3198.909 kb on + strand, within AMB_RS14940at 3198.910 kb on - strand, within AMB_RS14940

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
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3,193,260 + AMB_RS14930 0.83 -1.6
3,193,261 - AMB_RS14930 0.83 -0.2
3,193,261 - AMB_RS14930 0.83 +0.7
3,193,455 + AMB_RS14930 0.87 -2.6
3,193,455 + AMB_RS14930 0.87 -0.6
3,193,455 + AMB_RS14930 0.87 -0.1
3,193,455 + AMB_RS14930 0.87 +0.5
3,193,455 + AMB_RS14930 0.87 -0.1
3,193,588 + AMB_RS14930 0.89 -2.3
3,193,641 + AMB_RS14930 0.90 -0.0
3,193,641 + AMB_RS14930 0.90 +0.0
3,193,641 + AMB_RS14930 0.90 +0.2
3,193,641 + AMB_RS14930 0.90 +0.0
3,193,641 + AMB_RS14930 0.90 -0.5
3,193,641 + AMB_RS14930 0.90 -0.1
3,193,641 + AMB_RS14930 0.90 -0.2
3,193,641 + AMB_RS14930 0.90 -0.2
3,193,641 + AMB_RS14930 0.90 +0.6
3,193,641 + AMB_RS14930 0.90 +1.1
3,193,642 - AMB_RS14930 0.90 -0.5
3,193,642 - AMB_RS14930 0.90 -2.0
3,193,642 - AMB_RS14930 0.90 +0.3
3,193,642 - AMB_RS14930 0.90 +0.0
3,193,642 - AMB_RS14930 0.90 -0.5
3,193,642 - AMB_RS14930 0.90 +0.2
3,193,642 - AMB_RS14930 0.90 +1.0
3,193,642 - AMB_RS14930 0.90 -0.4
3,193,642 - AMB_RS14930 0.90 +0.1
3,193,642 - AMB_RS14930 0.90 +0.2
3,193,642 - AMB_RS14930 0.90 -1.1
3,194,095 + -0.2
3,194,096 - +0.4
3,194,147 - -0.3
3,194,147 - -0.4
3,194,268 - +0.0
3,194,268 - -0.2
3,194,378 + +0.1
3,194,378 + -0.1
3,195,164 + AMB_RS14935 0.25 -0.1
3,195,164 + AMB_RS14935 0.25 +0.3
3,195,164 + AMB_RS14935 0.25 -0.5
3,195,165 - AMB_RS14935 0.25 +0.8
3,195,165 - AMB_RS14935 0.25 +0.1
3,195,165 - AMB_RS14935 0.25 -0.0
3,195,165 - AMB_RS14935 0.25 +0.5
3,195,427 + AMB_RS14935 0.33 -0.4
3,195,428 - AMB_RS14935 0.33 -0.3
3,196,367 + AMB_RS14935 0.58 -0.6
3,196,367 + AMB_RS14935 0.58 -0.6
3,196,367 + AMB_RS14935 0.58 -0.0
3,196,487 + AMB_RS14935 0.61 -0.8
3,196,488 - AMB_RS14935 0.61 -0.3
3,196,601 + AMB_RS14935 0.64 +0.6
3,196,601 + AMB_RS14935 0.64 -0.1
3,196,601 + AMB_RS14935 0.64 -2.0
3,196,601 + AMB_RS14935 0.64 -1.6
3,196,601 + AMB_RS14935 0.64 +1.2
3,196,601 + AMB_RS14935 0.64 -0.4
3,196,602 - AMB_RS14935 0.64 -0.7
3,196,647 - AMB_RS14935 0.66 -3.0
3,196,674 - AMB_RS14935 0.66 +0.2
3,197,117 + AMB_RS14935 0.78 -0.5
3,197,117 + AMB_RS14935 0.78 -0.3
3,197,276 + AMB_RS14935 0.83 -1.0
3,197,277 - AMB_RS14935 0.83 -0.4
3,197,852 + -1.6
3,197,853 - +0.2
3,198,148 + AMB_RS14940 0.13 -0.5
3,198,148 + AMB_RS14940 0.13 -0.8
3,198,148 + AMB_RS14940 0.13 +1.1
3,198,148 + AMB_RS14940 0.13 -0.2
3,198,149 - AMB_RS14940 0.13 -0.3
3,198,149 - AMB_RS14940 0.13 +0.2
3,198,149 - AMB_RS14940 0.13 -0.0
3,198,225 + AMB_RS14940 0.19 +0.1
3,198,319 + AMB_RS14940 0.25 -0.6
3,198,319 + AMB_RS14940 0.25 -0.6
3,198,319 + AMB_RS14940 0.25 -0.2
3,198,319 + AMB_RS14940 0.25 +1.1
3,198,320 - AMB_RS14940 0.25 -2.1
3,198,341 + AMB_RS14940 0.26 +0.2
3,198,341 + AMB_RS14940 0.26 -1.3
3,198,341 + AMB_RS14940 0.26 -2.6
3,198,341 + AMB_RS14940 0.26 +0.5
3,198,341 + AMB_RS14940 0.26 -0.7
3,198,341 + AMB_RS14940 0.26 +0.2
3,198,341 + AMB_RS14940 0.26 -1.0
3,198,342 - AMB_RS14940 0.26 -0.1
3,198,342 - AMB_RS14940 0.26 -0.8
3,198,342 - AMB_RS14940 0.26 -1.0
3,198,343 + AMB_RS14940 0.26 +0.4
3,198,343 + AMB_RS14940 0.26 -0.1
3,198,344 - AMB_RS14940 0.26 -0.4
3,198,361 + AMB_RS14940 0.28 -1.9
3,198,361 + AMB_RS14940 0.28 +0.5
3,198,362 - AMB_RS14940 0.28 -0.4
3,198,376 + AMB_RS14940 0.29 -0.3
3,198,376 + AMB_RS14940 0.29 -0.7
3,198,376 + AMB_RS14940 0.29 +0.5
3,198,376 + AMB_RS14940 0.29 +1.2
3,198,376 + AMB_RS14940 0.29 -0.2
3,198,376 + AMB_RS14940 0.29 -1.4
3,198,376 + AMB_RS14940 0.29 +0.6
3,198,377 - AMB_RS14940 0.29 -0.6
3,198,377 - AMB_RS14940 0.29 +1.8
3,198,377 - AMB_RS14940 0.29 -0.4
3,198,377 - AMB_RS14940 0.29 +0.0
3,198,511 + AMB_RS14940 0.38 -1.1
3,198,566 - AMB_RS14940 0.41 +0.1
3,198,566 - AMB_RS14940 0.41 -1.2
3,198,718 + AMB_RS14940 0.52 -0.1
3,198,718 + AMB_RS14940 0.52 -0.6
3,198,719 - AMB_RS14940 0.52 -1.4
3,198,719 - AMB_RS14940 0.52 -0.7
3,198,733 + AMB_RS14940 0.53 +0.1
3,198,734 - AMB_RS14940 0.53 -0.5
3,198,909 + AMB_RS14940 0.64 +0.4
3,198,910 - AMB_RS14940 0.64 -1.6

Or see this region's nucleotide sequence