Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS12675

Experiment: carbonsource_succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS12665 and AMB_RS12670 overlap by 4 nucleotidesAMB_RS12670 and AMB_RS12675 overlap by 1 nucleotidesAMB_RS12675 and AMB_RS12680 are separated by 1 nucleotides AMB_RS12665: AMB_RS12665 - M23 family peptidase, at 2,700,365 to 2,701,456 _RS12665 AMB_RS12670: AMB_RS12670 - protein-L-isoaspartate O-methyltransferase, at 2,701,453 to 2,702,097 _RS12670 AMB_RS12675: AMB_RS12675 - 5'-nucleotidase SurE, at 2,702,097 to 2,702,879 _RS12675 AMB_RS12680: AMB_RS12680 - serine--tRNA ligase, at 2,702,881 to 2,704,149 _RS12680 Position (kb) 2702 2703Strain fitness (log2 ratio) -2 -1 0 1 2at 2701.134 kb on + strand, within AMB_RS12665at 2701.254 kb on + strand, within AMB_RS12665at 2701.344 kb on + strand, within AMB_RS12665at 2701.426 kb on + strandat 2701.959 kb on - strand, within AMB_RS12670at 2701.959 kb on - strand, within AMB_RS12670at 2702.246 kb on - strand, within AMB_RS12675at 2702.536 kb on + strand, within AMB_RS12675at 2702.537 kb on - strand, within AMB_RS12675

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
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2,701,134 + AMB_RS12665 0.70 -0.6
2,701,254 + AMB_RS12665 0.81 -0.8
2,701,344 + AMB_RS12665 0.90 +0.1
2,701,426 + +0.2
2,701,959 - AMB_RS12670 0.78 -0.7
2,701,959 - AMB_RS12670 0.78 -0.1
2,702,246 - AMB_RS12675 0.19 -2.6
2,702,536 + AMB_RS12675 0.56 +2.7
2,702,537 - AMB_RS12675 0.56 -0.6

Or see this region's nucleotide sequence