Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS12350

Experiment: carbonsource_succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS12345 and AMB_RS12350 are separated by 248 nucleotidesAMB_RS12350 and AMB_RS12355 overlap by 1 nucleotidesAMB_RS12355 and AMB_RS12360 overlap by 4 nucleotides AMB_RS12345: AMB_RS12345 - aldo/keto reductase, at 2,632,919 to 2,633,782 _RS12345 AMB_RS12350: AMB_RS12350 - ABC transporter ATP-binding protein, at 2,634,031 to 2,634,735 _RS12350 AMB_RS12355: AMB_RS12355 - ABC transporter ATP-binding protein, at 2,634,735 to 2,635,466 _RS12355 AMB_RS12360: AMB_RS12360 - branched-chain amino acid ABC transporter permease, at 2,635,463 to 2,636,455 _RS12360 Position (kb) 2634 2635Strain fitness (log2 ratio) -3 -2 -1 0 1at 2633.059 kb on - strand, within AMB_RS12345at 2633.166 kb on + strand, within AMB_RS12345at 2633.173 kb on + strand, within AMB_RS12345at 2633.226 kb on + strand, within AMB_RS12345at 2633.226 kb on + strand, within AMB_RS12345at 2633.226 kb on + strand, within AMB_RS12345at 2633.227 kb on - strand, within AMB_RS12345at 2633.227 kb on - strand, within AMB_RS12345at 2633.227 kb on - strand, within AMB_RS12345at 2633.227 kb on - strand, within AMB_RS12345at 2633.227 kb on - strand, within AMB_RS12345at 2633.257 kb on + strand, within AMB_RS12345at 2633.298 kb on + strand, within AMB_RS12345at 2633.298 kb on + strand, within AMB_RS12345at 2633.299 kb on - strand, within AMB_RS12345at 2633.299 kb on - strand, within AMB_RS12345at 2633.496 kb on + strand, within AMB_RS12345at 2633.496 kb on + strand, within AMB_RS12345at 2633.496 kb on + strand, within AMB_RS12345at 2633.496 kb on + strand, within AMB_RS12345at 2633.497 kb on - strand, within AMB_RS12345at 2633.497 kb on - strand, within AMB_RS12345at 2633.497 kb on - strand, within AMB_RS12345at 2633.497 kb on - strand, within AMB_RS12345at 2633.497 kb on - strand, within AMB_RS12345at 2633.550 kb on + strand, within AMB_RS12345at 2633.619 kb on + strand, within AMB_RS12345at 2633.811 kb on + strandat 2633.843 kb on + strandat 2633.932 kb on - strandat 2634.033 kb on - strandat 2634.033 kb on - strandat 2634.044 kb on + strandat 2634.044 kb on + strandat 2634.044 kb on + strandat 2634.045 kb on - strandat 2634.118 kb on + strand, within AMB_RS12350at 2634.138 kb on + strand, within AMB_RS12350at 2634.139 kb on - strand, within AMB_RS12350at 2634.139 kb on - strand, within AMB_RS12350at 2634.139 kb on - strand, within AMB_RS12350at 2634.758 kb on - strandat 2634.758 kb on - strandat 2634.911 kb on + strand, within AMB_RS12355at 2635.573 kb on - strand, within AMB_RS12360at 2635.573 kb on - strand, within AMB_RS12360

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
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2,633,059 - AMB_RS12345 0.16 -0.7
2,633,166 + AMB_RS12345 0.29 +1.0
2,633,173 + AMB_RS12345 0.29 -1.2
2,633,226 + AMB_RS12345 0.36 +0.2
2,633,226 + AMB_RS12345 0.36 -0.3
2,633,226 + AMB_RS12345 0.36 -0.5
2,633,227 - AMB_RS12345 0.36 -0.3
2,633,227 - AMB_RS12345 0.36 +0.9
2,633,227 - AMB_RS12345 0.36 -1.0
2,633,227 - AMB_RS12345 0.36 -0.5
2,633,227 - AMB_RS12345 0.36 -0.2
2,633,257 + AMB_RS12345 0.39 -0.3
2,633,298 + AMB_RS12345 0.44 -0.3
2,633,298 + AMB_RS12345 0.44 +0.2
2,633,299 - AMB_RS12345 0.44 -0.8
2,633,299 - AMB_RS12345 0.44 +0.4
2,633,496 + AMB_RS12345 0.67 -2.2
2,633,496 + AMB_RS12345 0.67 +0.9
2,633,496 + AMB_RS12345 0.67 -2.4
2,633,496 + AMB_RS12345 0.67 +1.0
2,633,497 - AMB_RS12345 0.67 +0.6
2,633,497 - AMB_RS12345 0.67 -0.8
2,633,497 - AMB_RS12345 0.67 +0.0
2,633,497 - AMB_RS12345 0.67 +0.5
2,633,497 - AMB_RS12345 0.67 -0.4
2,633,550 + AMB_RS12345 0.73 +0.5
2,633,619 + AMB_RS12345 0.81 -3.3
2,633,811 + -0.6
2,633,843 + -0.7
2,633,932 - -1.8
2,634,033 - -0.2
2,634,033 - -0.8
2,634,044 + -0.5
2,634,044 + +0.1
2,634,044 + -1.3
2,634,045 - +0.0
2,634,118 + AMB_RS12350 0.12 -0.5
2,634,138 + AMB_RS12350 0.15 -0.0
2,634,139 - AMB_RS12350 0.15 -0.5
2,634,139 - AMB_RS12350 0.15 -0.1
2,634,139 - AMB_RS12350 0.15 -1.7
2,634,758 - +0.2
2,634,758 - -0.3
2,634,911 + AMB_RS12355 0.24 +0.1
2,635,573 - AMB_RS12360 0.11 -1.3
2,635,573 - AMB_RS12360 0.11 -0.5

Or see this region's nucleotide sequence