Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09045

Experiment: carbonsource_succinate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS09035 and AMB_RS09040 are separated by 51 nucleotidesAMB_RS09040 and AMB_RS09045 are separated by 122 nucleotidesAMB_RS09045 and AMB_RS09050 are separated by 105 nucleotides AMB_RS09035: AMB_RS09035 - hypothetical protein, at 1,923,363 to 1,923,797 _RS09035 AMB_RS09040: AMB_RS09040 - hypothetical protein, at 1,923,849 to 1,924,271 _RS09040 AMB_RS09045: AMB_RS09045 - tRNA-Lys, at 1,924,394 to 1,924,469 _RS09045 AMB_RS09050: AMB_RS09050 - TrpB-like pyridoxal phosphate-dependent enzyme, at 1,924,575 to 1,926,002 _RS09050 Position (kb) 1924 1925Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1923.399 kb on + strandat 1923.591 kb on - strand, within AMB_RS09035at 1923.598 kb on + strand, within AMB_RS09035at 1923.709 kb on + strand, within AMB_RS09035at 1923.709 kb on + strand, within AMB_RS09035at 1923.710 kb on - strand, within AMB_RS09035at 1923.830 kb on + strandat 1923.872 kb on + strandat 1923.872 kb on + strandat 1923.872 kb on + strandat 1923.873 kb on - strandat 1923.873 kb on - strandat 1923.873 kb on - strandat 1923.925 kb on - strand, within AMB_RS09040at 1924.020 kb on + strand, within AMB_RS09040at 1924.021 kb on - strand, within AMB_RS09040at 1924.086 kb on + strand, within AMB_RS09040at 1924.087 kb on - strand, within AMB_RS09040at 1924.088 kb on + strand, within AMB_RS09040at 1924.089 kb on - strand, within AMB_RS09040at 1924.179 kb on + strand, within AMB_RS09040at 1924.180 kb on - strand, within AMB_RS09040at 1924.592 kb on + strandat 1924.592 kb on + strandat 1924.592 kb on + strandat 1924.592 kb on + strandat 1924.593 kb on - strandat 1924.593 kb on - strandat 1924.609 kb on + strandat 1924.610 kb on - strandat 1924.610 kb on - strandat 1924.610 kb on - strandat 1924.610 kb on - strandat 1924.662 kb on + strandat 1924.662 kb on + strandat 1924.663 kb on - strandat 1924.663 kb on - strandat 1924.663 kb on - strandat 1924.699 kb on - strandat 1924.866 kb on + strand, within AMB_RS09050at 1924.866 kb on + strand, within AMB_RS09050at 1924.867 kb on - strand, within AMB_RS09050at 1924.941 kb on + strand, within AMB_RS09050at 1924.941 kb on + strand, within AMB_RS09050at 1924.941 kb on + strand, within AMB_RS09050at 1924.941 kb on + strand, within AMB_RS09050at 1924.941 kb on + strand, within AMB_RS09050at 1924.942 kb on - strand, within AMB_RS09050at 1925.010 kb on + strand, within AMB_RS09050at 1925.010 kb on + strand, within AMB_RS09050at 1925.010 kb on + strand, within AMB_RS09050at 1925.011 kb on - strand, within AMB_RS09050at 1925.011 kb on - strand, within AMB_RS09050at 1925.011 kb on - strand, within AMB_RS09050at 1925.011 kb on - strand, within AMB_RS09050at 1925.011 kb on - strand, within AMB_RS09050at 1925.136 kb on + strand, within AMB_RS09050at 1925.175 kb on + strand, within AMB_RS09050at 1925.176 kb on - strand, within AMB_RS09050at 1925.176 kb on - strand, within AMB_RS09050at 1925.176 kb on - strand, within AMB_RS09050at 1925.319 kb on + strand, within AMB_RS09050at 1925.319 kb on + strand, within AMB_RS09050at 1925.320 kb on - strand, within AMB_RS09050at 1925.320 kb on - strand, within AMB_RS09050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
remove
1,923,399 + -0.8
1,923,591 - AMB_RS09035 0.52 -0.1
1,923,598 + AMB_RS09035 0.54 +0.8
1,923,709 + AMB_RS09035 0.80 -0.0
1,923,709 + AMB_RS09035 0.80 +0.3
1,923,710 - AMB_RS09035 0.80 -0.1
1,923,830 + -0.4
1,923,872 + +0.1
1,923,872 + +0.6
1,923,872 + -0.8
1,923,873 - -0.7
1,923,873 - -0.5
1,923,873 - -0.4
1,923,925 - AMB_RS09040 0.18 +0.4
1,924,020 + AMB_RS09040 0.40 -0.1
1,924,021 - AMB_RS09040 0.41 -0.5
1,924,086 + AMB_RS09040 0.56 -0.3
1,924,087 - AMB_RS09040 0.56 -0.4
1,924,088 + AMB_RS09040 0.57 -0.2
1,924,089 - AMB_RS09040 0.57 +0.0
1,924,179 + AMB_RS09040 0.78 +0.4
1,924,180 - AMB_RS09040 0.78 -1.8
1,924,592 + -0.3
1,924,592 + +0.9
1,924,592 + -0.7
1,924,592 + +1.2
1,924,593 - -2.8
1,924,593 - +0.3
1,924,609 + -2.4
1,924,610 - -0.4
1,924,610 - -0.8
1,924,610 - -0.1
1,924,610 - +1.0
1,924,662 + +0.1
1,924,662 + -0.1
1,924,663 - -0.6
1,924,663 - -0.3
1,924,663 - -0.3
1,924,699 - +0.8
1,924,866 + AMB_RS09050 0.20 -0.3
1,924,866 + AMB_RS09050 0.20 +0.4
1,924,867 - AMB_RS09050 0.20 -0.2
1,924,941 + AMB_RS09050 0.26 -0.5
1,924,941 + AMB_RS09050 0.26 -0.2
1,924,941 + AMB_RS09050 0.26 -1.0
1,924,941 + AMB_RS09050 0.26 -0.3
1,924,941 + AMB_RS09050 0.26 -2.4
1,924,942 - AMB_RS09050 0.26 +0.1
1,925,010 + AMB_RS09050 0.30 -0.3
1,925,010 + AMB_RS09050 0.30 -2.4
1,925,010 + AMB_RS09050 0.30 -1.3
1,925,011 - AMB_RS09050 0.31 -0.2
1,925,011 - AMB_RS09050 0.31 -0.3
1,925,011 - AMB_RS09050 0.31 +0.6
1,925,011 - AMB_RS09050 0.31 -0.1
1,925,011 - AMB_RS09050 0.31 +0.4
1,925,136 + AMB_RS09050 0.39 -0.5
1,925,175 + AMB_RS09050 0.42 -1.8
1,925,176 - AMB_RS09050 0.42 -3.5
1,925,176 - AMB_RS09050 0.42 +0.1
1,925,176 - AMB_RS09050 0.42 +0.2
1,925,319 + AMB_RS09050 0.52 -1.4
1,925,319 + AMB_RS09050 0.52 +1.8
1,925,320 - AMB_RS09050 0.52 -0.6
1,925,320 - AMB_RS09050 0.52 -0.8

Or see this region's nucleotide sequence