Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06990

Experiment: carbonsource_succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06985 and AMB_RS06990 are separated by 41 nucleotidesAMB_RS06990 and AMB_RS06995 are separated by 30 nucleotides AMB_RS06985: AMB_RS06985 - fructose-bisphosphate aldolase class II, at 1,496,422 to 1,497,486 _RS06985 AMB_RS06990: AMB_RS06990 - transketolase, at 1,497,528 to 1,499,501 _RS06990 AMB_RS06995: AMB_RS06995 - fructose-bisphosphatase class II, at 1,499,532 to 1,500,488 _RS06995 Position (kb) 1497 1498 1499 1500Strain fitness (log2 ratio) -2 -1 0 1at 1497.530 kb on - strandat 1499.993 kb on - strand, within AMB_RS06995at 1499.993 kb on - strand, within AMB_RS06995at 1499.993 kb on - strand, within AMB_RS06995at 1500.116 kb on - strand, within AMB_RS06995at 1500.278 kb on - strand, within AMB_RS06995at 1500.278 kb on - strand, within AMB_RS06995at 1500.278 kb on - strand, within AMB_RS06995at 1500.416 kb on - strandat 1500.458 kb on - strandat 1500.458 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
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1,497,530 - -0.3
1,499,993 - AMB_RS06995 0.48 -0.3
1,499,993 - AMB_RS06995 0.48 -0.2
1,499,993 - AMB_RS06995 0.48 -0.0
1,500,116 - AMB_RS06995 0.61 -1.4
1,500,278 - AMB_RS06995 0.78 -0.2
1,500,278 - AMB_RS06995 0.78 -0.1
1,500,278 - AMB_RS06995 0.78 -0.3
1,500,416 - -0.5
1,500,458 - -2.3
1,500,458 - +0.5

Or see this region's nucleotide sequence