Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06985

Experiment: carbonsource_succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06975 and AMB_RS06980 overlap by 32 nucleotidesAMB_RS06980 and AMB_RS06985 are separated by 141 nucleotidesAMB_RS06985 and AMB_RS06990 are separated by 41 nucleotides AMB_RS06975: AMB_RS06975 - hemerythrin, at 1,495,161 to 1,495,670 _RS06975 AMB_RS06980: AMB_RS06980 - ribulose-phosphate 3-epimerase, at 1,495,639 to 1,496,280 _RS06980 AMB_RS06985: AMB_RS06985 - fructose-bisphosphate aldolase class II, at 1,496,422 to 1,497,486 _RS06985 AMB_RS06990: AMB_RS06990 - transketolase, at 1,497,528 to 1,499,501 _RS06990 Position (kb) 1496 1497 1498Strain fitness (log2 ratio) -2 -1 0 1at 1495.571 kb on + strand, within AMB_RS06975at 1496.299 kb on - strandat 1496.413 kb on - strandat 1496.413 kb on - strandat 1496.413 kb on - strandat 1496.413 kb on - strandat 1496.413 kb on - strandat 1497.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
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1,495,571 + AMB_RS06975 0.80 -1.8
1,496,299 - -1.9
1,496,413 - -0.2
1,496,413 - +0.2
1,496,413 - -1.1
1,496,413 - -0.5
1,496,413 - +0.9
1,497,530 - -0.3

Or see this region's nucleotide sequence