Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06935

Experiment: carbonsource_succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06930 and AMB_RS06935 are separated by 237 nucleotidesAMB_RS06935 and AMB_RS06940 overlap by 1 nucleotidesAMB_RS06940 and AMB_RS06945 are separated by 140 nucleotides AMB_RS06930: AMB_RS06930 - hopanoid biosynthesis associated radical SAM protein HpnH, at 1,485,420 to 1,486,571 _RS06930 AMB_RS06935: AMB_RS06935 - phosphate regulon transcriptional regulatory protein PhoB, at 1,486,809 to 1,487,531 _RS06935 AMB_RS06940: AMB_RS06940 - phosphate transport system regulatory protein PhoU, at 1,487,531 to 1,488,226 _RS06940 AMB_RS06945: AMB_RS06945 - phosphate ABC transporter ATP-binding protein, at 1,488,367 to 1,489,146 _RS06945 Position (kb) 1486 1487 1488Strain fitness (log2 ratio) -2 -1 0 1at 1486.675 kb on + strandat 1486.693 kb on + strandat 1486.939 kb on + strand, within AMB_RS06935at 1486.939 kb on + strand, within AMB_RS06935at 1486.939 kb on + strand, within AMB_RS06935at 1486.939 kb on + strand, within AMB_RS06935at 1486.939 kb on + strand, within AMB_RS06935at 1486.939 kb on + strand, within AMB_RS06935at 1486.939 kb on + strand, within AMB_RS06935at 1486.940 kb on - strand, within AMB_RS06935at 1486.940 kb on - strand, within AMB_RS06935at 1486.940 kb on - strand, within AMB_RS06935at 1486.940 kb on - strand, within AMB_RS06935at 1487.201 kb on - strand, within AMB_RS06935at 1487.446 kb on + strand, within AMB_RS06935at 1487.447 kb on - strand, within AMB_RS06935at 1487.447 kb on - strand, within AMB_RS06935at 1487.532 kb on + strandat 1487.533 kb on - strandat 1487.533 kb on - strandat 1487.533 kb on - strandat 1487.734 kb on + strand, within AMB_RS06940at 1487.735 kb on - strand, within AMB_RS06940at 1487.737 kb on + strand, within AMB_RS06940at 1487.737 kb on + strand, within AMB_RS06940at 1487.737 kb on + strand, within AMB_RS06940at 1487.737 kb on + strand, within AMB_RS06940at 1487.737 kb on + strand, within AMB_RS06940at 1487.737 kb on + strand, within AMB_RS06940at 1487.737 kb on + strand, within AMB_RS06940at 1487.738 kb on - strand, within AMB_RS06940at 1487.738 kb on - strand, within AMB_RS06940at 1487.738 kb on - strand, within AMB_RS06940at 1487.739 kb on + strand, within AMB_RS06940at 1487.739 kb on + strand, within AMB_RS06940at 1487.739 kb on + strand, within AMB_RS06940at 1487.740 kb on - strand, within AMB_RS06940at 1487.740 kb on - strand, within AMB_RS06940at 1487.750 kb on + strand, within AMB_RS06940at 1487.751 kb on - strand, within AMB_RS06940at 1487.751 kb on - strand, within AMB_RS06940at 1487.805 kb on + strand, within AMB_RS06940at 1487.805 kb on + strand, within AMB_RS06940at 1487.805 kb on + strand, within AMB_RS06940at 1487.805 kb on + strand, within AMB_RS06940at 1487.805 kb on + strand, within AMB_RS06940at 1487.805 kb on + strand, within AMB_RS06940at 1487.805 kb on + strand, within AMB_RS06940at 1487.806 kb on - strand, within AMB_RS06940at 1487.806 kb on - strand, within AMB_RS06940at 1487.806 kb on - strand, within AMB_RS06940at 1487.928 kb on + strand, within AMB_RS06940at 1487.928 kb on + strand, within AMB_RS06940at 1488.317 kb on + strandat 1488.389 kb on + strandat 1488.389 kb on + strandat 1488.389 kb on + strandat 1488.389 kb on + strandat 1488.390 kb on - strandat 1488.390 kb on - strandat 1488.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
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1,486,675 + -0.0
1,486,693 + +1.2
1,486,939 + AMB_RS06935 0.18 +0.0
1,486,939 + AMB_RS06935 0.18 +0.3
1,486,939 + AMB_RS06935 0.18 -0.3
1,486,939 + AMB_RS06935 0.18 +0.4
1,486,939 + AMB_RS06935 0.18 +0.1
1,486,939 + AMB_RS06935 0.18 -0.7
1,486,939 + AMB_RS06935 0.18 -1.1
1,486,940 - AMB_RS06935 0.18 +0.0
1,486,940 - AMB_RS06935 0.18 -1.8
1,486,940 - AMB_RS06935 0.18 -0.2
1,486,940 - AMB_RS06935 0.18 +0.2
1,487,201 - AMB_RS06935 0.54 +0.3
1,487,446 + AMB_RS06935 0.88 -0.9
1,487,447 - AMB_RS06935 0.88 -0.1
1,487,447 - AMB_RS06935 0.88 -0.8
1,487,532 + -0.8
1,487,533 - -0.2
1,487,533 - -0.2
1,487,533 - -1.0
1,487,734 + AMB_RS06940 0.29 -0.1
1,487,735 - AMB_RS06940 0.29 -2.4
1,487,737 + AMB_RS06940 0.30 +0.6
1,487,737 + AMB_RS06940 0.30 +0.0
1,487,737 + AMB_RS06940 0.30 -0.1
1,487,737 + AMB_RS06940 0.30 -0.6
1,487,737 + AMB_RS06940 0.30 -0.7
1,487,737 + AMB_RS06940 0.30 -0.8
1,487,737 + AMB_RS06940 0.30 -0.2
1,487,738 - AMB_RS06940 0.30 -0.9
1,487,738 - AMB_RS06940 0.30 +0.1
1,487,738 - AMB_RS06940 0.30 +0.9
1,487,739 + AMB_RS06940 0.30 -1.3
1,487,739 + AMB_RS06940 0.30 +0.2
1,487,739 + AMB_RS06940 0.30 -0.1
1,487,740 - AMB_RS06940 0.30 -0.4
1,487,740 - AMB_RS06940 0.30 -0.7
1,487,750 + AMB_RS06940 0.31 -0.1
1,487,751 - AMB_RS06940 0.32 +0.6
1,487,751 - AMB_RS06940 0.32 -0.6
1,487,805 + AMB_RS06940 0.39 -0.6
1,487,805 + AMB_RS06940 0.39 -0.4
1,487,805 + AMB_RS06940 0.39 -0.2
1,487,805 + AMB_RS06940 0.39 -0.5
1,487,805 + AMB_RS06940 0.39 +0.4
1,487,805 + AMB_RS06940 0.39 -1.3
1,487,805 + AMB_RS06940 0.39 -1.2
1,487,806 - AMB_RS06940 0.40 -0.3
1,487,806 - AMB_RS06940 0.40 -0.5
1,487,806 - AMB_RS06940 0.40 +0.4
1,487,928 + AMB_RS06940 0.57 -0.2
1,487,928 + AMB_RS06940 0.57 -0.8
1,488,317 + -0.4
1,488,389 + +0.3
1,488,389 + +0.6
1,488,389 + -0.9
1,488,389 + +0.1
1,488,390 - -0.7
1,488,390 - -1.4
1,488,390 - -0.5

Or see this region's nucleotide sequence