Experiment: carbonsource_succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS05825 and AMB_RS05830 are separated by 92 nucleotides AMB_RS05830 and AMB_RS05835 are separated by 17 nucleotides AMB_RS05835 and AMB_RS05840 are separated by 17 nucleotides AMB_RS05840 and AMB_RS05845 are separated by 11 nucleotides AMB_RS05845 and AMB_RS05850 are separated by 10 nucleotides
AMB_RS05825: AMB_RS05825 - hypothetical protein, at 1,230,184 to 1,230,663
_RS05825
AMB_RS05830: AMB_RS05830 - ATPase AAA, at 1,230,756 to 1,231,592
_RS05830
AMB_RS05835: AMB_RS05835 - hypothetical protein, at 1,231,610 to 1,232,353
_RS05835
AMB_RS05840: AMB_RS05840 - hypothetical protein, at 1,232,371 to 1,232,598
_RS05840
AMB_RS05845: AMB_RS05845 - hypothetical protein, at 1,232,610 to 1,232,966
_RS05845
AMB_RS05850: AMB_RS05850 - hypothetical protein, at 1,232,977 to 1,233,774
_RS05850
Position (kb)
1231
1232
1233 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1230.763 kb on + strand at 1230.890 kb on + strand, within AMB_RS05830 at 1230.891 kb on - strand, within AMB_RS05830 at 1231.027 kb on - strand, within AMB_RS05830 at 1231.027 kb on - strand, within AMB_RS05830 at 1231.062 kb on + strand, within AMB_RS05830 at 1231.062 kb on + strand, within AMB_RS05830 at 1231.063 kb on - strand, within AMB_RS05830 at 1231.063 kb on - strand, within AMB_RS05830 at 1231.063 kb on - strand, within AMB_RS05830 at 1231.063 kb on - strand, within AMB_RS05830 at 1231.216 kb on - strand, within AMB_RS05830 at 1231.237 kb on + strand, within AMB_RS05830 at 1231.238 kb on - strand, within AMB_RS05830 at 1231.238 kb on - strand, within AMB_RS05830 at 1231.403 kb on + strand, within AMB_RS05830 at 1231.404 kb on - strand, within AMB_RS05830 at 1231.404 kb on - strand, within AMB_RS05830 at 1231.404 kb on - strand, within AMB_RS05830 at 1231.404 kb on - strand, within AMB_RS05830 at 1231.404 kb on - strand, within AMB_RS05830 at 1231.404 kb on - strand, within AMB_RS05830 at 1231.616 kb on + strand at 1231.616 kb on + strand at 1231.894 kb on + strand, within AMB_RS05835 at 1232.061 kb on - strand, within AMB_RS05835 at 1232.111 kb on + strand, within AMB_RS05835 at 1232.111 kb on + strand, within AMB_RS05835 at 1232.112 kb on - strand, within AMB_RS05835 at 1232.370 kb on + strand at 1232.370 kb on + strand at 1232.370 kb on + strand at 1232.371 kb on - strand at 1232.371 kb on - strand at 1232.371 kb on - strand at 1232.371 kb on - strand at 1232.640 kb on + strand at 1232.641 kb on - strand at 1232.668 kb on - strand, within AMB_RS05845 at 1232.889 kb on + strand, within AMB_RS05845 at 1232.890 kb on - strand, within AMB_RS05845 at 1233.010 kb on + strand at 1233.109 kb on + strand, within AMB_RS05850 at 1233.109 kb on + strand, within AMB_RS05850 at 1233.110 kb on - strand, within AMB_RS05850 at 1233.110 kb on - strand, within AMB_RS05850 at 1233.157 kb on + strand, within AMB_RS05850 at 1233.158 kb on - strand, within AMB_RS05850 at 1233.163 kb on + strand, within AMB_RS05850
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_succinate remove 1,230,763 + -1.2 1,230,890 + AMB_RS05830 0.16 -0.4 1,230,891 - AMB_RS05830 0.16 -0.1 1,231,027 - AMB_RS05830 0.32 -0.4 1,231,027 - AMB_RS05830 0.32 -0.2 1,231,062 + AMB_RS05830 0.37 -1.1 1,231,062 + AMB_RS05830 0.37 -0.0 1,231,063 - AMB_RS05830 0.37 -1.8 1,231,063 - AMB_RS05830 0.37 +1.2 1,231,063 - AMB_RS05830 0.37 -0.5 1,231,063 - AMB_RS05830 0.37 -0.3 1,231,216 - AMB_RS05830 0.55 -2.6 1,231,237 + AMB_RS05830 0.57 +0.1 1,231,238 - AMB_RS05830 0.58 +0.8 1,231,238 - AMB_RS05830 0.58 -0.1 1,231,403 + AMB_RS05830 0.77 -2.8 1,231,404 - AMB_RS05830 0.77 -0.4 1,231,404 - AMB_RS05830 0.77 +0.6 1,231,404 - AMB_RS05830 0.77 -1.0 1,231,404 - AMB_RS05830 0.77 -3.1 1,231,404 - AMB_RS05830 0.77 -0.6 1,231,404 - AMB_RS05830 0.77 -0.2 1,231,616 + -0.0 1,231,616 + +1.1 1,231,894 + AMB_RS05835 0.38 -0.2 1,232,061 - AMB_RS05835 0.61 -0.3 1,232,111 + AMB_RS05835 0.67 -0.4 1,232,111 + AMB_RS05835 0.67 -0.0 1,232,112 - AMB_RS05835 0.67 -0.1 1,232,370 + -0.1 1,232,370 + -0.3 1,232,370 + -0.6 1,232,371 - -0.3 1,232,371 - +0.3 1,232,371 - -0.1 1,232,371 - +0.1 1,232,640 + -0.5 1,232,641 - -0.4 1,232,668 - AMB_RS05845 0.16 +0.2 1,232,889 + AMB_RS05845 0.78 -0.3 1,232,890 - AMB_RS05845 0.78 +0.2 1,233,010 + -0.8 1,233,109 + AMB_RS05850 0.17 +0.2 1,233,109 + AMB_RS05850 0.17 +0.7 1,233,110 - AMB_RS05850 0.17 +0.4 1,233,110 - AMB_RS05850 0.17 -0.1 1,233,157 + AMB_RS05850 0.23 -1.6 1,233,158 - AMB_RS05850 0.23 +0.2 1,233,163 + AMB_RS05850 0.23 -0.3
Or see this region's nucleotide sequence