Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04570

Experiment: carbonsource_succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04565 and AMB_RS04570 overlap by 4 nucleotidesAMB_RS04570 and AMB_RS04575 are separated by 105 nucleotides AMB_RS04565: AMB_RS04565 - PAS domain-containing sensor histidine kinase, at 955,888 to 957,855 _RS04565 AMB_RS04570: AMB_RS04570 - DNA-binding response regulator, at 957,852 to 958,454 _RS04570 AMB_RS04575: AMB_RS04575 - DNA-binding response regulator, at 958,560 to 959,210 _RS04575 Position (kb) 957 958 959Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 956.902 kb on + strand, within AMB_RS04565at 956.902 kb on + strand, within AMB_RS04565at 956.902 kb on + strand, within AMB_RS04565at 956.902 kb on + strand, within AMB_RS04565at 956.928 kb on + strand, within AMB_RS04565at 956.928 kb on + strand, within AMB_RS04565at 956.928 kb on + strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.932 kb on + strand, within AMB_RS04565at 956.933 kb on - strand, within AMB_RS04565at 956.933 kb on - strand, within AMB_RS04565at 956.933 kb on - strand, within AMB_RS04565at 956.933 kb on - strand, within AMB_RS04565at 956.933 kb on - strand, within AMB_RS04565at 957.032 kb on - strand, within AMB_RS04565at 957.153 kb on + strand, within AMB_RS04565at 957.154 kb on - strand, within AMB_RS04565at 957.235 kb on + strand, within AMB_RS04565at 957.236 kb on - strand, within AMB_RS04565at 957.236 kb on - strand, within AMB_RS04565at 957.750 kb on + strandat 957.750 kb on + strandat 957.750 kb on + strandat 957.751 kb on - strandat 957.762 kb on + strandat 957.763 kb on - strandat 957.865 kb on + strandat 957.865 kb on + strandat 957.865 kb on + strandat 957.866 kb on - strandat 957.870 kb on + strandat 957.870 kb on + strandat 957.870 kb on + strandat 957.870 kb on + strandat 957.870 kb on + strandat 957.871 kb on - strandat 957.871 kb on - strandat 957.871 kb on - strandat 957.871 kb on - strandat 958.470 kb on + strandat 958.471 kb on - strandat 958.541 kb on + strandat 958.581 kb on + strandat 958.581 kb on + strandat 958.582 kb on - strandat 959.004 kb on + strand, within AMB_RS04575at 959.042 kb on + strand, within AMB_RS04575at 959.224 kb on + strandat 959.225 kb on - strandat 959.362 kb on - strandat 959.412 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
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956,902 + AMB_RS04565 0.52 -2.7
956,902 + AMB_RS04565 0.52 -2.3
956,902 + AMB_RS04565 0.52 -1.9
956,902 + AMB_RS04565 0.52 -2.3
956,928 + AMB_RS04565 0.53 -3.8
956,928 + AMB_RS04565 0.53 -2.9
956,928 + AMB_RS04565 0.53 -3.2
956,929 - AMB_RS04565 0.53 -2.4
956,929 - AMB_RS04565 0.53 -2.5
956,929 - AMB_RS04565 0.53 -3.7
956,929 - AMB_RS04565 0.53 -2.6
956,929 - AMB_RS04565 0.53 -3.3
956,929 - AMB_RS04565 0.53 -3.7
956,929 - AMB_RS04565 0.53 -3.2
956,929 - AMB_RS04565 0.53 +0.3
956,929 - AMB_RS04565 0.53 -2.7
956,929 - AMB_RS04565 0.53 -2.7
956,929 - AMB_RS04565 0.53 -1.0
956,932 + AMB_RS04565 0.53 -1.0
956,933 - AMB_RS04565 0.53 -0.9
956,933 - AMB_RS04565 0.53 -3.7
956,933 - AMB_RS04565 0.53 -1.7
956,933 - AMB_RS04565 0.53 -2.4
956,933 - AMB_RS04565 0.53 -3.0
957,032 - AMB_RS04565 0.58 -1.3
957,153 + AMB_RS04565 0.64 -3.0
957,154 - AMB_RS04565 0.64 -2.2
957,235 + AMB_RS04565 0.68 -3.4
957,236 - AMB_RS04565 0.68 -2.9
957,236 - AMB_RS04565 0.68 -4.5
957,750 + -1.6
957,750 + +0.5
957,750 + -0.8
957,751 - -2.9
957,762 + +1.1
957,763 - -4.0
957,865 + +0.5
957,865 + -1.2
957,865 + -3.0
957,866 - -3.4
957,870 + +0.9
957,870 + -0.2
957,870 + -3.7
957,870 + -1.9
957,870 + +1.3
957,871 - -2.7
957,871 - -3.6
957,871 - -3.3
957,871 - -2.3
958,470 + -0.1
958,471 - -0.2
958,541 + +0.3
958,581 + +0.5
958,581 + -0.7
958,582 - +1.9
959,004 + AMB_RS04575 0.68 +0.3
959,042 + AMB_RS04575 0.74 +1.9
959,224 + +0.2
959,225 - -0.6
959,362 - -0.6
959,412 + +0.0

Or see this region's nucleotide sequence