Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03580

Experiment: carbonsource_succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03575 and AMB_RS03580 are separated by 77 nucleotidesAMB_RS03580 and AMB_RS03585 are separated by 188 nucleotides AMB_RS03575: AMB_RS03575 - type I glutamate--ammonia ligase, at 749,515 to 750,927 _RS03575 AMB_RS03580: AMB_RS03580 - tRNA-Met, at 751,005 to 751,080 _RS03580 AMB_RS03585: AMB_RS03585 - RNA polymerase sigma factor RpoD, at 751,269 to 753,308 _RS03585 Position (kb) 751 752Strain fitness (log2 ratio) -1 0 1at 751.110 kb on - strandat 751.265 kb on + strandat 751.265 kb on + strandat 751.265 kb on + strandat 751.265 kb on + strandat 751.266 kb on - strandat 751.266 kb on - strandat 751.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
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751,110 - +0.1
751,265 + +0.7
751,265 + -1.1
751,265 + -0.2
751,265 + +0.5
751,266 - +0.2
751,266 - -0.7
751,275 - +0.0

Or see this region's nucleotide sequence