Experiment: carbonsource_succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03500 and AMB_RS03505 are separated by 33 nucleotides AMB_RS03505 and AMB_RS03510 are separated by 455 nucleotides
AMB_RS03500: AMB_RS03500 - DNA-protecting protein DprA, at 731,923 to 733,050
_RS03500
AMB_RS03505: AMB_RS03505 - type I DNA topoisomerase, at 733,084 to 735,774
_RS03505
AMB_RS03510: AMB_RS03510 - flagellin-like protein, at 736,230 to 737,816
_RS03510
Position (kb) 733
734
735
736 Strain fitness (log2 ratio) -1
0
1 at 732.191 kb on - strand, within AMB_RS03500 at 732.358 kb on + strand, within AMB_RS03500 at 732.358 kb on + strand, within AMB_RS03500 at 732.358 kb on + strand, within AMB_RS03500 at 732.359 kb on - strand, within AMB_RS03500 at 732.359 kb on - strand, within AMB_RS03500 at 732.463 kb on + strand, within AMB_RS03500 at 732.463 kb on + strand, within AMB_RS03500 at 732.556 kb on + strand, within AMB_RS03500 at 732.556 kb on + strand, within AMB_RS03500 at 732.556 kb on + strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.861 kb on + strand, within AMB_RS03500 at 735.772 kb on + strand at 735.773 kb on - strand at 735.919 kb on - strand at 736.105 kb on - strand at 736.105 kb on - strand at 736.177 kb on + strand at 736.177 kb on + strand at 736.177 kb on + strand at 736.177 kb on + strand at 736.177 kb on + strand at 736.178 kb on - strand at 736.213 kb on + strand at 736.213 kb on + strand at 736.213 kb on + strand at 736.213 kb on + strand at 736.214 kb on - strand at 736.229 kb on + strand at 736.230 kb on - strand at 736.248 kb on - strand at 736.248 kb on - strand at 736.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_succinate remove 732,191 - AMB_RS03500 0.24 -0.2 732,358 + AMB_RS03500 0.39 -0.7 732,358 + AMB_RS03500 0.39 -0.5 732,358 + AMB_RS03500 0.39 -0.3 732,359 - AMB_RS03500 0.39 -0.2 732,359 - AMB_RS03500 0.39 -0.1 732,463 + AMB_RS03500 0.48 +0.3 732,463 + AMB_RS03500 0.48 +0.4 732,556 + AMB_RS03500 0.56 -0.3 732,556 + AMB_RS03500 0.56 +0.1 732,556 + AMB_RS03500 0.56 -0.3 732,557 - AMB_RS03500 0.56 -0.0 732,557 - AMB_RS03500 0.56 -0.2 732,557 - AMB_RS03500 0.56 -0.1 732,557 - AMB_RS03500 0.56 -0.1 732,557 - AMB_RS03500 0.56 -0.2 732,861 + AMB_RS03500 0.83 +0.1 735,772 + -0.2 735,773 - +0.1 735,919 - +0.3 736,105 - -0.8 736,105 - -0.9 736,177 + -0.1 736,177 + -0.6 736,177 + +0.9 736,177 + -0.1 736,177 + -0.4 736,178 - -0.5 736,213 + +0.3 736,213 + -0.4 736,213 + -1.5 736,213 + +0.2 736,214 - -1.0 736,229 + -0.3 736,230 - -0.5 736,248 - -0.6 736,248 - -0.5 736,248 - -0.5
Or see this region's nucleotide sequence