Experiment: carbonsource_succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03480 and AMB_RS03485 are separated by 72 nucleotides AMB_RS03485 and AMB_RS03490 overlap by 4 nucleotides AMB_RS03490 and AMB_RS03495 are separated by 183 nucleotides
AMB_RS03480: AMB_RS03480 - isovaleryl-CoA dehydrogenase, at 727,976 to 729,145
_RS03480
AMB_RS03485: AMB_RS03485 - AEC family transporter, at 729,218 to 730,156
_RS03485
AMB_RS03490: AMB_RS03490 - cAMP-binding protein, at 730,153 to 730,554
_RS03490
AMB_RS03495: AMB_RS03495 - alpha/beta hydrolase, at 730,738 to 731,874
_RS03495
Position (kb) 729
730
731 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 728.226 kb on + strand, within AMB_RS03480 at 728.226 kb on + strand, within AMB_RS03480 at 728.226 kb on + strand, within AMB_RS03480 at 728.227 kb on - strand, within AMB_RS03480 at 728.232 kb on + strand, within AMB_RS03480 at 728.232 kb on + strand, within AMB_RS03480 at 728.232 kb on + strand, within AMB_RS03480 at 728.233 kb on - strand, within AMB_RS03480 at 728.233 kb on - strand, within AMB_RS03480 at 728.233 kb on - strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.259 kb on + strand, within AMB_RS03480 at 728.260 kb on - strand, within AMB_RS03480 at 728.260 kb on - strand, within AMB_RS03480 at 728.260 kb on - strand, within AMB_RS03480 at 728.334 kb on + strand, within AMB_RS03480 at 728.335 kb on - strand, within AMB_RS03480 at 728.403 kb on + strand, within AMB_RS03480 at 728.404 kb on - strand, within AMB_RS03480 at 728.404 kb on - strand, within AMB_RS03480 at 728.619 kb on + strand, within AMB_RS03480 at 728.620 kb on - strand, within AMB_RS03480 at 728.620 kb on - strand, within AMB_RS03480 at 728.620 kb on - strand, within AMB_RS03480 at 728.620 kb on - strand, within AMB_RS03480 at 728.620 kb on - strand, within AMB_RS03480 at 728.682 kb on + strand, within AMB_RS03480 at 728.682 kb on + strand, within AMB_RS03480 at 728.682 kb on + strand, within AMB_RS03480 at 728.682 kb on + strand, within AMB_RS03480 at 728.682 kb on + strand, within AMB_RS03480 at 728.683 kb on - strand, within AMB_RS03480 at 728.683 kb on - strand, within AMB_RS03480 at 728.768 kb on - strand, within AMB_RS03480 at 728.769 kb on + strand, within AMB_RS03480 at 728.769 kb on + strand, within AMB_RS03480 at 728.769 kb on + strand, within AMB_RS03480 at 728.769 kb on + strand, within AMB_RS03480 at 728.770 kb on - strand, within AMB_RS03480 at 728.770 kb on - strand, within AMB_RS03480 at 728.796 kb on + strand, within AMB_RS03480 at 728.797 kb on - strand, within AMB_RS03480 at 728.866 kb on - strand, within AMB_RS03480 at 728.928 kb on + strand, within AMB_RS03480 at 728.949 kb on + strand, within AMB_RS03480 at 728.950 kb on - strand, within AMB_RS03480 at 728.950 kb on - strand, within AMB_RS03480 at 728.950 kb on - strand, within AMB_RS03480 at 728.950 kb on - strand, within AMB_RS03480 at 729.159 kb on + strand at 729.159 kb on + strand at 729.160 kb on - strand at 729.160 kb on - strand at 729.336 kb on + strand, within AMB_RS03485 at 729.336 kb on + strand, within AMB_RS03485 at 729.336 kb on + strand, within AMB_RS03485 at 729.336 kb on + strand, within AMB_RS03485 at 729.337 kb on - strand, within AMB_RS03485 at 729.337 kb on - strand, within AMB_RS03485 at 729.366 kb on + strand, within AMB_RS03485 at 729.367 kb on - strand, within AMB_RS03485 at 729.367 kb on - strand, within AMB_RS03485 at 729.367 kb on - strand, within AMB_RS03485 at 729.423 kb on + strand, within AMB_RS03485 at 729.423 kb on + strand, within AMB_RS03485 at 729.423 kb on + strand, within AMB_RS03485 at 729.807 kb on - strand, within AMB_RS03485 at 729.822 kb on + strand, within AMB_RS03485 at 729.822 kb on + strand, within AMB_RS03485 at 729.822 kb on + strand, within AMB_RS03485 at 729.822 kb on + strand, within AMB_RS03485 at 729.822 kb on + strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 730.463 kb on + strand, within AMB_RS03490 at 730.463 kb on + strand, within AMB_RS03490 at 730.464 kb on - strand, within AMB_RS03490 at 730.594 kb on + strand at 730.594 kb on + strand at 730.595 kb on - strand at 730.654 kb on + strand at 730.846 kb on - strand at 730.906 kb on + strand, within AMB_RS03495 at 730.906 kb on + strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 731.124 kb on + strand, within AMB_RS03495 at 731.125 kb on - strand, within AMB_RS03495 at 731.155 kb on + strand, within AMB_RS03495 at 731.155 kb on + strand, within AMB_RS03495 at 731.156 kb on - strand, within AMB_RS03495 at 731.156 kb on - strand, within AMB_RS03495 at 731.156 kb on - strand, within AMB_RS03495 at 731.156 kb on - strand, within AMB_RS03495
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_succinate remove 728,226 + AMB_RS03480 0.21 -0.4 728,226 + AMB_RS03480 0.21 +0.2 728,226 + AMB_RS03480 0.21 +0.4 728,227 - AMB_RS03480 0.21 -1.0 728,232 + AMB_RS03480 0.22 -1.6 728,232 + AMB_RS03480 0.22 -0.9 728,232 + AMB_RS03480 0.22 -0.2 728,233 - AMB_RS03480 0.22 +0.2 728,233 - AMB_RS03480 0.22 -0.2 728,233 - AMB_RS03480 0.22 -0.1 728,259 + AMB_RS03480 0.24 -1.7 728,259 + AMB_RS03480 0.24 -0.2 728,259 + AMB_RS03480 0.24 -0.3 728,259 + AMB_RS03480 0.24 -1.0 728,259 + AMB_RS03480 0.24 +0.3 728,259 + AMB_RS03480 0.24 -3.0 728,259 + AMB_RS03480 0.24 -0.1 728,259 + AMB_RS03480 0.24 +0.3 728,259 + AMB_RS03480 0.24 -1.0 728,259 + AMB_RS03480 0.24 -0.1 728,259 + AMB_RS03480 0.24 +0.7 728,259 + AMB_RS03480 0.24 +1.1 728,259 + AMB_RS03480 0.24 -1.4 728,260 - AMB_RS03480 0.24 -1.5 728,260 - AMB_RS03480 0.24 -2.6 728,260 - AMB_RS03480 0.24 +0.0 728,334 + AMB_RS03480 0.31 +0.7 728,335 - AMB_RS03480 0.31 +0.3 728,403 + AMB_RS03480 0.36 +0.5 728,404 - AMB_RS03480 0.37 +0.4 728,404 - AMB_RS03480 0.37 +0.5 728,619 + AMB_RS03480 0.55 -1.3 728,620 - AMB_RS03480 0.55 -0.6 728,620 - AMB_RS03480 0.55 -0.6 728,620 - AMB_RS03480 0.55 -0.2 728,620 - AMB_RS03480 0.55 -0.3 728,620 - AMB_RS03480 0.55 -0.3 728,682 + AMB_RS03480 0.60 +0.2 728,682 + AMB_RS03480 0.60 +0.5 728,682 + AMB_RS03480 0.60 -0.7 728,682 + AMB_RS03480 0.60 +0.4 728,682 + AMB_RS03480 0.60 -0.0 728,683 - AMB_RS03480 0.60 +1.0 728,683 - AMB_RS03480 0.60 +0.3 728,768 - AMB_RS03480 0.68 +0.9 728,769 + AMB_RS03480 0.68 -1.0 728,769 + AMB_RS03480 0.68 -0.2 728,769 + AMB_RS03480 0.68 -0.1 728,769 + AMB_RS03480 0.68 +0.1 728,770 - AMB_RS03480 0.68 -1.3 728,770 - AMB_RS03480 0.68 +0.9 728,796 + AMB_RS03480 0.70 -0.8 728,797 - AMB_RS03480 0.70 -0.4 728,866 - AMB_RS03480 0.76 -0.3 728,928 + AMB_RS03480 0.81 +1.6 728,949 + AMB_RS03480 0.83 +1.9 728,950 - AMB_RS03480 0.83 +0.0 728,950 - AMB_RS03480 0.83 +0.1 728,950 - AMB_RS03480 0.83 -1.0 728,950 - AMB_RS03480 0.83 -1.3 729,159 + +1.0 729,159 + +0.9 729,160 - +1.2 729,160 - -0.6 729,336 + AMB_RS03485 0.13 -1.5 729,336 + AMB_RS03485 0.13 +0.0 729,336 + AMB_RS03485 0.13 +1.1 729,336 + AMB_RS03485 0.13 +0.4 729,337 - AMB_RS03485 0.13 -0.8 729,337 - AMB_RS03485 0.13 -0.4 729,366 + AMB_RS03485 0.16 +0.2 729,367 - AMB_RS03485 0.16 -1.0 729,367 - AMB_RS03485 0.16 +0.8 729,367 - AMB_RS03485 0.16 -1.5 729,423 + AMB_RS03485 0.22 -0.1 729,423 + AMB_RS03485 0.22 +0.0 729,423 + AMB_RS03485 0.22 -0.1 729,807 - AMB_RS03485 0.63 -0.1 729,822 + AMB_RS03485 0.64 -0.1 729,822 + AMB_RS03485 0.64 +1.0 729,822 + AMB_RS03485 0.64 -0.3 729,822 + AMB_RS03485 0.64 -0.1 729,822 + AMB_RS03485 0.64 -0.7 729,823 - AMB_RS03485 0.64 +0.2 729,823 - AMB_RS03485 0.64 +1.2 729,823 - AMB_RS03485 0.64 -0.7 729,823 - AMB_RS03485 0.64 +0.1 729,823 - AMB_RS03485 0.64 +0.1 729,823 - AMB_RS03485 0.64 -0.0 729,823 - AMB_RS03485 0.64 -0.2 729,823 - AMB_RS03485 0.64 +0.7 729,823 - AMB_RS03485 0.64 -0.0 729,823 - AMB_RS03485 0.64 -0.6 729,823 - AMB_RS03485 0.64 +1.1 730,463 + AMB_RS03490 0.77 +0.4 730,463 + AMB_RS03490 0.77 -0.2 730,464 - AMB_RS03490 0.77 -0.8 730,594 + +1.1 730,594 + -0.4 730,595 - +0.1 730,654 + -0.6 730,846 - -0.9 730,906 + AMB_RS03495 0.15 -0.5 730,906 + AMB_RS03495 0.15 +0.0 730,907 - AMB_RS03495 0.15 -1.7 730,907 - AMB_RS03495 0.15 +0.0 730,907 - AMB_RS03495 0.15 -0.0 730,907 - AMB_RS03495 0.15 -0.0 730,907 - AMB_RS03495 0.15 -0.1 730,907 - AMB_RS03495 0.15 +0.4 730,907 - AMB_RS03495 0.15 +1.3 731,124 + AMB_RS03495 0.34 +0.2 731,125 - AMB_RS03495 0.34 -1.1 731,155 + AMB_RS03495 0.37 -0.7 731,155 + AMB_RS03495 0.37 -0.2 731,156 - AMB_RS03495 0.37 +1.0 731,156 - AMB_RS03495 0.37 -0.1 731,156 - AMB_RS03495 0.37 -0.5 731,156 - AMB_RS03495 0.37 +0.0
Or see this region's nucleotide sequence