Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02570

Experiment: carbonsource_succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02565 and AMB_RS02570 are separated by 4 nucleotidesAMB_RS02570 and AMB_RS02575 are separated by 27 nucleotidesAMB_RS02575 and AMB_RS02580 are separated by 12 nucleotides AMB_RS02565: AMB_RS02565 - flagellar biosynthesis protein FlhA, at 531,567 to 533,678 _RS02565 AMB_RS02570: AMB_RS02570 - sigma-54-dependent Fis family transcriptional regulator, at 533,683 to 535,056 _RS02570 AMB_RS02575: AMB_RS02575 - flagellar motor switch protein FliN, at 535,084 to 535,410 _RS02575 AMB_RS02580: AMB_RS02580 - flagellar assembly protein H, at 535,423 to 536,100 _RS02580 Position (kb) 533 534 535 536Strain fitness (log2 ratio) -3 -2 -1 0 1at 532.687 kb on + strand, within AMB_RS02565at 532.687 kb on + strand, within AMB_RS02565at 532.688 kb on - strand, within AMB_RS02565at 532.798 kb on + strand, within AMB_RS02565at 532.937 kb on - strand, within AMB_RS02565at 532.937 kb on - strand, within AMB_RS02565at 533.684 kb on + strandat 533.684 kb on + strandat 533.684 kb on + strandat 533.684 kb on + strandat 533.684 kb on + strandat 533.685 kb on - strandat 533.685 kb on - strandat 533.685 kb on - strandat 533.685 kb on - strandat 533.685 kb on - strandat 533.747 kb on + strandat 534.134 kb on + strand, within AMB_RS02570at 534.135 kb on - strand, within AMB_RS02570at 534.135 kb on - strand, within AMB_RS02570at 534.228 kb on - strand, within AMB_RS02570at 534.228 kb on - strand, within AMB_RS02570at 534.228 kb on - strand, within AMB_RS02570at 534.228 kb on - strand, within AMB_RS02570at 534.228 kb on - strand, within AMB_RS02570at 534.773 kb on + strand, within AMB_RS02570at 534.773 kb on + strand, within AMB_RS02570at 534.773 kb on + strand, within AMB_RS02570at 534.773 kb on + strand, within AMB_RS02570at 534.773 kb on + strand, within AMB_RS02570at 534.773 kb on + strand, within AMB_RS02570at 534.774 kb on - strand, within AMB_RS02570at 534.774 kb on - strand, within AMB_RS02570at 534.774 kb on - strand, within AMB_RS02570at 534.774 kb on - strand, within AMB_RS02570at 534.774 kb on - strand, within AMB_RS02570at 534.774 kb on - strand, within AMB_RS02570at 534.774 kb on - strand, within AMB_RS02570at 534.774 kb on - strand, within AMB_RS02570at 534.774 kb on - strand, within AMB_RS02570at 535.181 kb on + strand, within AMB_RS02575at 535.181 kb on + strand, within AMB_RS02575at 535.181 kb on + strand, within AMB_RS02575at 535.181 kb on + strand, within AMB_RS02575at 535.181 kb on + strand, within AMB_RS02575at 535.307 kb on + strand, within AMB_RS02575at 535.307 kb on + strand, within AMB_RS02575at 535.308 kb on - strand, within AMB_RS02575at 535.424 kb on + strandat 535.665 kb on + strand, within AMB_RS02580at 535.666 kb on - strand, within AMB_RS02580at 535.690 kb on + strand, within AMB_RS02580at 535.690 kb on + strand, within AMB_RS02580at 535.690 kb on + strand, within AMB_RS02580at 535.690 kb on + strand, within AMB_RS02580at 535.690 kb on + strand, within AMB_RS02580at 535.931 kb on + strand, within AMB_RS02580at 535.931 kb on + strand, within AMB_RS02580at 535.932 kb on - strand, within AMB_RS02580

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
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532,687 + AMB_RS02565 0.53 +0.2
532,687 + AMB_RS02565 0.53 +1.1
532,688 - AMB_RS02565 0.53 +0.2
532,798 + AMB_RS02565 0.58 +0.3
532,937 - AMB_RS02565 0.65 -0.8
532,937 - AMB_RS02565 0.65 -0.3
533,684 + +0.2
533,684 + +0.5
533,684 + -0.2
533,684 + +0.6
533,684 + +0.2
533,685 - -0.2
533,685 - -0.7
533,685 - -1.4
533,685 - -0.2
533,685 - +0.3
533,747 + -0.2
534,134 + AMB_RS02570 0.33 -0.7
534,135 - AMB_RS02570 0.33 -0.2
534,135 - AMB_RS02570 0.33 -0.5
534,228 - AMB_RS02570 0.40 +0.7
534,228 - AMB_RS02570 0.40 -0.6
534,228 - AMB_RS02570 0.40 +0.5
534,228 - AMB_RS02570 0.40 +1.0
534,228 - AMB_RS02570 0.40 -0.3
534,773 + AMB_RS02570 0.79 -0.5
534,773 + AMB_RS02570 0.79 -1.2
534,773 + AMB_RS02570 0.79 -0.7
534,773 + AMB_RS02570 0.79 -2.3
534,773 + AMB_RS02570 0.79 -0.3
534,773 + AMB_RS02570 0.79 -0.7
534,774 - AMB_RS02570 0.79 +0.2
534,774 - AMB_RS02570 0.79 -2.1
534,774 - AMB_RS02570 0.79 +0.3
534,774 - AMB_RS02570 0.79 -0.9
534,774 - AMB_RS02570 0.79 +1.6
534,774 - AMB_RS02570 0.79 -0.4
534,774 - AMB_RS02570 0.79 -0.7
534,774 - AMB_RS02570 0.79 -0.0
534,774 - AMB_RS02570 0.79 +0.5
535,181 + AMB_RS02575 0.30 -0.4
535,181 + AMB_RS02575 0.30 -1.0
535,181 + AMB_RS02575 0.30 -0.1
535,181 + AMB_RS02575 0.30 -0.6
535,181 + AMB_RS02575 0.30 -3.2
535,307 + AMB_RS02575 0.68 -0.7
535,307 + AMB_RS02575 0.68 +0.6
535,308 - AMB_RS02575 0.69 -0.3
535,424 + +0.0
535,665 + AMB_RS02580 0.36 +0.2
535,666 - AMB_RS02580 0.36 -0.4
535,690 + AMB_RS02580 0.39 -0.7
535,690 + AMB_RS02580 0.39 +0.2
535,690 + AMB_RS02580 0.39 -0.3
535,690 + AMB_RS02580 0.39 -0.0
535,690 + AMB_RS02580 0.39 -0.4
535,931 + AMB_RS02580 0.75 -0.1
535,931 + AMB_RS02580 0.75 +0.2
535,932 - AMB_RS02580 0.75 -0.2

Or see this region's nucleotide sequence