Experiment: carbonsource_succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00670 and AMB_RS00675 are separated by 4 nucleotides AMB_RS00675 and AMB_RS00680 are separated by 4 nucleotides AMB_RS00680 and AMB_RS00685 overlap by 4 nucleotides AMB_RS00685 and AMB_RS00690 overlap by 104 nucleotides
AMB_RS00670: AMB_RS00670 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 153,441 to 154,208
_RS00670
AMB_RS00675: AMB_RS00675 - KR domain-containing protein, at 154,213 to 154,929
_RS00675
AMB_RS00680: AMB_RS00680 - 3-dehydroquinate synthase, at 154,934 to 155,992
_RS00680
AMB_RS00685: AMB_RS00685 - phosphoglycerate dehydrogenase, at 155,989 to 156,945
_RS00685
AMB_RS00690: AMB_RS00690 - hypothetical protein, at 156,842 to 158,740
_RS00690
Position (kb) 154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 154.203 kb on + strand at 154.203 kb on + strand at 154.203 kb on + strand at 154.203 kb on + strand at 154.961 kb on + strand at 155.150 kb on + strand, within AMB_RS00680 at 155.150 kb on + strand, within AMB_RS00680 at 155.582 kb on + strand, within AMB_RS00680 at 155.582 kb on + strand, within AMB_RS00680 at 155.582 kb on + strand, within AMB_RS00680 at 155.582 kb on + strand, within AMB_RS00680 at 155.584 kb on + strand, within AMB_RS00680 at 155.795 kb on + strand, within AMB_RS00680 at 156.982 kb on + strand at 156.982 kb on + strand at 156.982 kb on + strand at 156.982 kb on + strand at 156.982 kb on + strand at 156.982 kb on + strand at 156.982 kb on + strand at 156.982 kb on + strand at 156.982 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbonsource_succinate remove 154,203 + -0.6 154,203 + +2.0 154,203 + -0.2 154,203 + +0.6 154,961 + +0.7 155,150 + AMB_RS00680 0.20 -1.6 155,150 + AMB_RS00680 0.20 +0.8 155,582 + AMB_RS00680 0.61 -0.5 155,582 + AMB_RS00680 0.61 -0.1 155,582 + AMB_RS00680 0.61 -1.6 155,582 + AMB_RS00680 0.61 -0.2 155,584 + AMB_RS00680 0.61 -1.8 155,795 + AMB_RS00680 0.81 -0.8 156,982 + -2.4 156,982 + -0.1 156,982 + -0.2 156,982 + -0.2 156,982 + -0.6 156,982 + +0.6 156,982 + -0.0 156,982 + -0.9 156,982 + +1.8
Or see this region's nucleotide sequence