Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00335

Experiment: carbonsource_succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00330 and AMB_RS00335 are separated by 28 nucleotidesAMB_RS00335 and AMB_RS00340 overlap by 1 nucleotidesAMB_RS00340 and AMB_RS00345 overlap by 1 nucleotides AMB_RS00330: AMB_RS00330 - aminoglycoside phosphotransferase family protein, at 72,091 to 73,149 _RS00330 AMB_RS00335: AMB_RS00335 - transketolase, at 73,178 to 74,005 _RS00335 AMB_RS00340: AMB_RS00340 - transketolase, at 74,005 to 74,922 _RS00340 AMB_RS00345: AMB_RS00345 - hypothetical protein, at 74,922 to 75,731 _RS00345 Position (kb) 73 74 75Strain fitness (log2 ratio) -1 0 1at 73.145 kb on + strandat 73.146 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
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73,145 + -1.2
73,146 - +0.4

Or see this region's nucleotide sequence