Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21815

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21805 and ABIE41_RS21810 are separated by 18 nucleotidesABIE41_RS21810 and ABIE41_RS21815 are separated by 116 nucleotidesABIE41_RS21815 and ABIE41_RS21820 are separated by 136 nucleotidesABIE41_RS21820 and ABIE41_RS21825 are separated by 180 nucleotides ABIE41_RS21805: ABIE41_RS21805 - ABC transporter ATP-binding protein, at 4,484,501 to 4,485,199 _RS21805 ABIE41_RS21810: ABIE41_RS21810 - cupin domain-containing protein, at 4,485,218 to 4,485,676 _RS21810 ABIE41_RS21815: ABIE41_RS21815 - PilZ domain-containing protein, at 4,485,793 to 4,486,119 _RS21815 ABIE41_RS21820: ABIE41_RS21820 - PilZ domain-containing protein, at 4,486,256 to 4,486,624 _RS21820 ABIE41_RS21825: ABIE41_RS21825 - PilZ domain-containing protein, at 4,486,805 to 4,487,164 _RS21825 Position (kb) 4485 4486 4487Strain fitness (log2 ratio) -2 -1 0 1 2at 4484.846 kb on + strand, within ABIE41_RS21805at 4484.846 kb on + strand, within ABIE41_RS21805at 4484.846 kb on + strand, within ABIE41_RS21805at 4484.846 kb on + strand, within ABIE41_RS21805at 4484.846 kb on + strand, within ABIE41_RS21805at 4484.846 kb on + strand, within ABIE41_RS21805at 4484.847 kb on - strand, within ABIE41_RS21805at 4485.280 kb on + strand, within ABIE41_RS21810at 4485.296 kb on + strand, within ABIE41_RS21810at 4485.296 kb on + strand, within ABIE41_RS21810at 4485.296 kb on + strand, within ABIE41_RS21810at 4485.296 kb on + strand, within ABIE41_RS21810at 4485.296 kb on + strand, within ABIE41_RS21810at 4485.296 kb on + strand, within ABIE41_RS21810at 4485.296 kb on + strand, within ABIE41_RS21810at 4485.296 kb on + strand, within ABIE41_RS21810at 4485.296 kb on + strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.297 kb on - strand, within ABIE41_RS21810at 4485.300 kb on + strand, within ABIE41_RS21810at 4485.301 kb on - strand, within ABIE41_RS21810at 4485.301 kb on - strand, within ABIE41_RS21810at 4485.401 kb on + strand, within ABIE41_RS21810at 4485.401 kb on + strand, within ABIE41_RS21810at 4485.401 kb on + strand, within ABIE41_RS21810at 4485.401 kb on + strand, within ABIE41_RS21810at 4485.401 kb on + strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.402 kb on - strand, within ABIE41_RS21810at 4485.563 kb on + strand, within ABIE41_RS21810at 4485.564 kb on - strand, within ABIE41_RS21810at 4485.564 kb on - strand, within ABIE41_RS21810at 4485.564 kb on - strand, within ABIE41_RS21810at 4485.704 kb on + strandat 4485.832 kb on + strand, within ABIE41_RS21815at 4485.832 kb on + strand, within ABIE41_RS21815at 4485.832 kb on + strand, within ABIE41_RS21815at 4486.155 kb on + strandat 4486.155 kb on + strandat 4486.155 kb on + strandat 4486.316 kb on + strand, within ABIE41_RS21820at 4486.316 kb on + strand, within ABIE41_RS21820at 4486.316 kb on + strand, within ABIE41_RS21820at 4486.393 kb on + strand, within ABIE41_RS21820at 4486.394 kb on - strand, within ABIE41_RS21820at 4486.449 kb on - strand, within ABIE41_RS21820at 4486.767 kb on - strandat 4486.882 kb on + strand, within ABIE41_RS21825at 4486.882 kb on + strand, within ABIE41_RS21825at 4486.997 kb on + strand, within ABIE41_RS21825at 4486.997 kb on + strand, within ABIE41_RS21825at 4486.998 kb on - strand, within ABIE41_RS21825at 4486.998 kb on - strand, within ABIE41_RS21825at 4486.998 kb on - strand, within ABIE41_RS21825at 4486.998 kb on - strand, within ABIE41_RS21825at 4486.998 kb on - strand, within ABIE41_RS21825

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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4,484,846 + ABIE41_RS21805 0.49 +0.3
4,484,846 + ABIE41_RS21805 0.49 -0.2
4,484,846 + ABIE41_RS21805 0.49 -0.0
4,484,846 + ABIE41_RS21805 0.49 +0.8
4,484,846 + ABIE41_RS21805 0.49 +0.3
4,484,846 + ABIE41_RS21805 0.49 +0.1
4,484,847 - ABIE41_RS21805 0.49 -0.1
4,485,280 + ABIE41_RS21810 0.14 +0.2
4,485,296 + ABIE41_RS21810 0.17 -0.9
4,485,296 + ABIE41_RS21810 0.17 +0.1
4,485,296 + ABIE41_RS21810 0.17 +0.1
4,485,296 + ABIE41_RS21810 0.17 -1.6
4,485,296 + ABIE41_RS21810 0.17 +0.7
4,485,296 + ABIE41_RS21810 0.17 +0.4
4,485,296 + ABIE41_RS21810 0.17 +0.8
4,485,296 + ABIE41_RS21810 0.17 +1.7
4,485,296 + ABIE41_RS21810 0.17 +0.2
4,485,297 - ABIE41_RS21810 0.17 -0.3
4,485,297 - ABIE41_RS21810 0.17 -0.5
4,485,297 - ABIE41_RS21810 0.17 -0.5
4,485,297 - ABIE41_RS21810 0.17 -0.2
4,485,297 - ABIE41_RS21810 0.17 -1.0
4,485,297 - ABIE41_RS21810 0.17 -0.8
4,485,297 - ABIE41_RS21810 0.17 -0.1
4,485,297 - ABIE41_RS21810 0.17 +0.2
4,485,297 - ABIE41_RS21810 0.17 +0.3
4,485,297 - ABIE41_RS21810 0.17 +0.5
4,485,297 - ABIE41_RS21810 0.17 +0.4
4,485,297 - ABIE41_RS21810 0.17 -0.5
4,485,297 - ABIE41_RS21810 0.17 +0.7
4,485,297 - ABIE41_RS21810 0.17 -0.4
4,485,300 + ABIE41_RS21810 0.18 -1.1
4,485,301 - ABIE41_RS21810 0.18 +0.6
4,485,301 - ABIE41_RS21810 0.18 -1.4
4,485,401 + ABIE41_RS21810 0.40 -1.1
4,485,401 + ABIE41_RS21810 0.40 -0.3
4,485,401 + ABIE41_RS21810 0.40 -0.2
4,485,401 + ABIE41_RS21810 0.40 -0.6
4,485,401 + ABIE41_RS21810 0.40 +0.3
4,485,402 - ABIE41_RS21810 0.40 -0.1
4,485,402 - ABIE41_RS21810 0.40 -0.4
4,485,402 - ABIE41_RS21810 0.40 -0.5
4,485,402 - ABIE41_RS21810 0.40 -0.3
4,485,402 - ABIE41_RS21810 0.40 +0.4
4,485,402 - ABIE41_RS21810 0.40 +1.0
4,485,402 - ABIE41_RS21810 0.40 -0.3
4,485,402 - ABIE41_RS21810 0.40 +0.4
4,485,402 - ABIE41_RS21810 0.40 +1.4
4,485,402 - ABIE41_RS21810 0.40 -0.1
4,485,402 - ABIE41_RS21810 0.40 +0.1
4,485,402 - ABIE41_RS21810 0.40 +0.4
4,485,402 - ABIE41_RS21810 0.40 +0.3
4,485,402 - ABIE41_RS21810 0.40 +0.8
4,485,563 + ABIE41_RS21810 0.75 -1.0
4,485,564 - ABIE41_RS21810 0.75 -0.1
4,485,564 - ABIE41_RS21810 0.75 +1.8
4,485,564 - ABIE41_RS21810 0.75 -0.0
4,485,704 + +0.6
4,485,832 + ABIE41_RS21815 0.12 -0.6
4,485,832 + ABIE41_RS21815 0.12 -2.6
4,485,832 + ABIE41_RS21815 0.12 -1.3
4,486,155 + -0.0
4,486,155 + -0.1
4,486,155 + +0.5
4,486,316 + ABIE41_RS21820 0.16 -0.6
4,486,316 + ABIE41_RS21820 0.16 +0.3
4,486,316 + ABIE41_RS21820 0.16 +1.4
4,486,393 + ABIE41_RS21820 0.37 +0.0
4,486,394 - ABIE41_RS21820 0.37 -0.5
4,486,449 - ABIE41_RS21820 0.52 +0.0
4,486,767 - +0.2
4,486,882 + ABIE41_RS21825 0.21 -0.2
4,486,882 + ABIE41_RS21825 0.21 -0.2
4,486,997 + ABIE41_RS21825 0.53 -0.2
4,486,997 + ABIE41_RS21825 0.53 -0.3
4,486,998 - ABIE41_RS21825 0.54 +1.6
4,486,998 - ABIE41_RS21825 0.54 -0.2
4,486,998 - ABIE41_RS21825 0.54 -0.2
4,486,998 - ABIE41_RS21825 0.54 +0.5
4,486,998 - ABIE41_RS21825 0.54 -0.6

Or see this region's nucleotide sequence