Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20440

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20435 and ABIE41_RS20440 are separated by 75 nucleotidesABIE41_RS20440 and ABIE41_RS20445 are separated by 111 nucleotidesABIE41_RS20445 and ABIE41_RS20450 are separated by 174 nucleotides ABIE41_RS20435: ABIE41_RS20435 - four-carbon acid sugar kinase family protein, at 4,200,659 to 4,201,726 _RS20435 ABIE41_RS20440: ABIE41_RS20440 - LysR family transcriptional regulator, at 4,201,802 to 4,202,680 _RS20440 ABIE41_RS20445: ABIE41_RS20445 - GNAT family N-acetyltransferase, at 4,202,792 to 4,203,307 _RS20445 ABIE41_RS20450: ABIE41_RS20450 - haloacid dehalogenase type II, at 4,203,482 to 4,204,150 _RS20450 Position (kb) 4201 4202 4203Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4201.317 kb on + strand, within ABIE41_RS20435at 4201.318 kb on - strand, within ABIE41_RS20435at 4201.318 kb on - strand, within ABIE41_RS20435at 4201.488 kb on + strand, within ABIE41_RS20435at 4201.488 kb on + strand, within ABIE41_RS20435at 4201.488 kb on + strand, within ABIE41_RS20435at 4201.488 kb on + strand, within ABIE41_RS20435at 4201.488 kb on + strand, within ABIE41_RS20435at 4201.489 kb on - strand, within ABIE41_RS20435at 4201.766 kb on + strandat 4202.354 kb on + strand, within ABIE41_RS20440at 4202.365 kb on - strand, within ABIE41_RS20440at 4202.585 kb on + strand, within ABIE41_RS20440at 4202.585 kb on + strand, within ABIE41_RS20440at 4202.865 kb on + strand, within ABIE41_RS20445at 4202.867 kb on + strand, within ABIE41_RS20445at 4202.868 kb on - strand, within ABIE41_RS20445at 4202.868 kb on - strand, within ABIE41_RS20445at 4202.868 kb on - strand, within ABIE41_RS20445at 4202.868 kb on - strand, within ABIE41_RS20445at 4202.868 kb on - strand, within ABIE41_RS20445at 4202.868 kb on - strand, within ABIE41_RS20445at 4202.869 kb on + strand, within ABIE41_RS20445at 4202.869 kb on + strand, within ABIE41_RS20445at 4202.869 kb on + strand, within ABIE41_RS20445at 4202.869 kb on + strand, within ABIE41_RS20445at 4202.870 kb on - strand, within ABIE41_RS20445at 4202.878 kb on + strand, within ABIE41_RS20445at 4202.878 kb on + strand, within ABIE41_RS20445at 4202.879 kb on - strand, within ABIE41_RS20445at 4203.005 kb on + strand, within ABIE41_RS20445at 4203.006 kb on - strand, within ABIE41_RS20445at 4203.008 kb on - strand, within ABIE41_RS20445at 4203.008 kb on - strand, within ABIE41_RS20445at 4203.008 kb on - strand, within ABIE41_RS20445at 4203.062 kb on + strand, within ABIE41_RS20445at 4203.062 kb on + strand, within ABIE41_RS20445at 4203.062 kb on + strand, within ABIE41_RS20445at 4203.062 kb on + strand, within ABIE41_RS20445at 4203.062 kb on + strand, within ABIE41_RS20445at 4203.062 kb on + strand, within ABIE41_RS20445at 4203.062 kb on + strand, within ABIE41_RS20445at 4203.062 kb on + strand, within ABIE41_RS20445at 4203.062 kb on + strand, within ABIE41_RS20445at 4203.063 kb on - strand, within ABIE41_RS20445at 4203.063 kb on - strand, within ABIE41_RS20445at 4203.063 kb on - strand, within ABIE41_RS20445at 4203.063 kb on - strand, within ABIE41_RS20445at 4203.063 kb on - strand, within ABIE41_RS20445at 4203.063 kb on - strand, within ABIE41_RS20445at 4203.063 kb on - strand, within ABIE41_RS20445at 4203.063 kb on - strand, within ABIE41_RS20445at 4203.063 kb on - strand, within ABIE41_RS20445at 4203.063 kb on - strand, within ABIE41_RS20445at 4203.063 kb on - strand, within ABIE41_RS20445at 4203.063 kb on - strand, within ABIE41_RS20445at 4203.108 kb on - strand, within ABIE41_RS20445at 4203.239 kb on + strand, within ABIE41_RS20445at 4203.240 kb on - strand, within ABIE41_RS20445at 4203.240 kb on - strand, within ABIE41_RS20445at 4203.240 kb on - strand, within ABIE41_RS20445at 4203.240 kb on - strand, within ABIE41_RS20445at 4203.429 kb on + strandat 4203.503 kb on + strandat 4203.504 kb on - strandat 4203.504 kb on - strandat 4203.504 kb on - strandat 4203.537 kb on - strandat 4203.570 kb on - strand, within ABIE41_RS20450at 4203.627 kb on - strand, within ABIE41_RS20450at 4203.662 kb on + strand, within ABIE41_RS20450at 4203.662 kb on + strand, within ABIE41_RS20450at 4203.663 kb on - strand, within ABIE41_RS20450at 4203.677 kb on + strand, within ABIE41_RS20450at 4203.677 kb on + strand, within ABIE41_RS20450at 4203.677 kb on + strand, within ABIE41_RS20450at 4203.678 kb on - strand, within ABIE41_RS20450at 4203.678 kb on - strand, within ABIE41_RS20450

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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4,201,317 + ABIE41_RS20435 0.62 -1.7
4,201,318 - ABIE41_RS20435 0.62 +0.1
4,201,318 - ABIE41_RS20435 0.62 -0.5
4,201,488 + ABIE41_RS20435 0.78 +0.7
4,201,488 + ABIE41_RS20435 0.78 +0.2
4,201,488 + ABIE41_RS20435 0.78 +0.5
4,201,488 + ABIE41_RS20435 0.78 -0.1
4,201,488 + ABIE41_RS20435 0.78 +1.7
4,201,489 - ABIE41_RS20435 0.78 +0.2
4,201,766 + -1.4
4,202,354 + ABIE41_RS20440 0.63 +0.5
4,202,365 - ABIE41_RS20440 0.64 +0.0
4,202,585 + ABIE41_RS20440 0.89 -0.9
4,202,585 + ABIE41_RS20440 0.89 -2.9
4,202,865 + ABIE41_RS20445 0.14 +0.3
4,202,867 + ABIE41_RS20445 0.15 -0.5
4,202,868 - ABIE41_RS20445 0.15 +0.1
4,202,868 - ABIE41_RS20445 0.15 -0.2
4,202,868 - ABIE41_RS20445 0.15 -0.1
4,202,868 - ABIE41_RS20445 0.15 -1.6
4,202,868 - ABIE41_RS20445 0.15 +0.4
4,202,868 - ABIE41_RS20445 0.15 -2.7
4,202,869 + ABIE41_RS20445 0.15 +0.4
4,202,869 + ABIE41_RS20445 0.15 -0.5
4,202,869 + ABIE41_RS20445 0.15 +0.9
4,202,869 + ABIE41_RS20445 0.15 -0.1
4,202,870 - ABIE41_RS20445 0.15 +1.6
4,202,878 + ABIE41_RS20445 0.17 -0.7
4,202,878 + ABIE41_RS20445 0.17 +0.4
4,202,879 - ABIE41_RS20445 0.17 -1.4
4,203,005 + ABIE41_RS20445 0.41 -0.3
4,203,006 - ABIE41_RS20445 0.41 -0.2
4,203,008 - ABIE41_RS20445 0.42 -0.2
4,203,008 - ABIE41_RS20445 0.42 -0.1
4,203,008 - ABIE41_RS20445 0.42 +0.2
4,203,062 + ABIE41_RS20445 0.52 +0.3
4,203,062 + ABIE41_RS20445 0.52 -0.9
4,203,062 + ABIE41_RS20445 0.52 +0.9
4,203,062 + ABIE41_RS20445 0.52 -0.0
4,203,062 + ABIE41_RS20445 0.52 -0.4
4,203,062 + ABIE41_RS20445 0.52 +1.4
4,203,062 + ABIE41_RS20445 0.52 -0.4
4,203,062 + ABIE41_RS20445 0.52 -0.9
4,203,062 + ABIE41_RS20445 0.52 +1.0
4,203,063 - ABIE41_RS20445 0.53 -0.5
4,203,063 - ABIE41_RS20445 0.53 +1.3
4,203,063 - ABIE41_RS20445 0.53 +2.2
4,203,063 - ABIE41_RS20445 0.53 -0.6
4,203,063 - ABIE41_RS20445 0.53 -0.3
4,203,063 - ABIE41_RS20445 0.53 +0.4
4,203,063 - ABIE41_RS20445 0.53 +0.0
4,203,063 - ABIE41_RS20445 0.53 -0.1
4,203,063 - ABIE41_RS20445 0.53 -0.4
4,203,063 - ABIE41_RS20445 0.53 -0.5
4,203,063 - ABIE41_RS20445 0.53 +0.4
4,203,063 - ABIE41_RS20445 0.53 -0.4
4,203,108 - ABIE41_RS20445 0.61 -0.3
4,203,239 + ABIE41_RS20445 0.87 +0.1
4,203,240 - ABIE41_RS20445 0.87 -0.1
4,203,240 - ABIE41_RS20445 0.87 +0.0
4,203,240 - ABIE41_RS20445 0.87 -0.4
4,203,240 - ABIE41_RS20445 0.87 -0.0
4,203,429 + +0.9
4,203,503 + +0.1
4,203,504 - -1.0
4,203,504 - +1.4
4,203,504 - -0.6
4,203,537 - -0.6
4,203,570 - ABIE41_RS20450 0.13 -0.3
4,203,627 - ABIE41_RS20450 0.22 +1.9
4,203,662 + ABIE41_RS20450 0.27 -2.4
4,203,662 + ABIE41_RS20450 0.27 +0.4
4,203,663 - ABIE41_RS20450 0.27 +0.8
4,203,677 + ABIE41_RS20450 0.29 +1.9
4,203,677 + ABIE41_RS20450 0.29 -0.2
4,203,677 + ABIE41_RS20450 0.29 +0.9
4,203,678 - ABIE41_RS20450 0.29 -2.1
4,203,678 - ABIE41_RS20450 0.29 +0.1

Or see this region's nucleotide sequence