Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05250

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05245 and ABIE41_RS05250 overlap by 4 nucleotidesABIE41_RS05250 and ABIE41_RS05255 are separated by 2 nucleotides ABIE41_RS05245: ABIE41_RS05245 - sugar ABC transporter permease, at 1,085,318 to 1,086,331 _RS05245 ABIE41_RS05250: ABIE41_RS05250 - carbohydrate ABC transporter permease, at 1,086,328 to 1,087,380 _RS05250 ABIE41_RS05255: ABIE41_RS05255 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 1,087,383 to 1,088,447 _RS05255 Position (kb) 1086 1087 1088Strain fitness (log2 ratio) -1 0 1 2at 1085.382 kb on + strandat 1085.382 kb on + strandat 1085.382 kb on + strandat 1085.383 kb on - strandat 1085.450 kb on + strand, within ABIE41_RS05245at 1085.450 kb on + strand, within ABIE41_RS05245at 1085.450 kb on + strand, within ABIE41_RS05245at 1085.450 kb on + strand, within ABIE41_RS05245at 1085.450 kb on + strand, within ABIE41_RS05245at 1085.450 kb on + strand, within ABIE41_RS05245at 1085.450 kb on + strand, within ABIE41_RS05245at 1085.450 kb on + strand, within ABIE41_RS05245at 1085.451 kb on - strand, within ABIE41_RS05245at 1085.451 kb on - strand, within ABIE41_RS05245at 1085.451 kb on - strand, within ABIE41_RS05245at 1085.451 kb on - strand, within ABIE41_RS05245at 1085.451 kb on - strand, within ABIE41_RS05245at 1085.451 kb on - strand, within ABIE41_RS05245at 1085.451 kb on - strand, within ABIE41_RS05245at 1085.585 kb on + strand, within ABIE41_RS05245at 1085.585 kb on + strand, within ABIE41_RS05245at 1085.585 kb on + strand, within ABIE41_RS05245at 1085.585 kb on + strand, within ABIE41_RS05245at 1085.585 kb on + strand, within ABIE41_RS05245at 1085.585 kb on + strand, within ABIE41_RS05245at 1085.591 kb on + strand, within ABIE41_RS05245at 1085.591 kb on + strand, within ABIE41_RS05245at 1085.591 kb on + strand, within ABIE41_RS05245at 1085.591 kb on + strand, within ABIE41_RS05245at 1085.591 kb on + strand, within ABIE41_RS05245at 1085.591 kb on + strand, within ABIE41_RS05245at 1085.591 kb on + strand, within ABIE41_RS05245at 1085.592 kb on - strand, within ABIE41_RS05245at 1085.592 kb on - strand, within ABIE41_RS05245at 1085.774 kb on + strand, within ABIE41_RS05245at 1085.774 kb on + strand, within ABIE41_RS05245at 1085.774 kb on + strand, within ABIE41_RS05245at 1085.775 kb on - strand, within ABIE41_RS05245at 1085.775 kb on - strand, within ABIE41_RS05245at 1085.950 kb on + strand, within ABIE41_RS05245at 1085.950 kb on + strand, within ABIE41_RS05245at 1085.951 kb on - strand, within ABIE41_RS05245at 1085.951 kb on - strand, within ABIE41_RS05245at 1085.951 kb on - strand, within ABIE41_RS05245at 1085.960 kb on + strand, within ABIE41_RS05245at 1085.960 kb on + strand, within ABIE41_RS05245at 1085.960 kb on + strand, within ABIE41_RS05245at 1085.960 kb on + strand, within ABIE41_RS05245at 1085.961 kb on - strand, within ABIE41_RS05245at 1085.961 kb on - strand, within ABIE41_RS05245at 1085.961 kb on - strand, within ABIE41_RS05245at 1085.961 kb on - strand, within ABIE41_RS05245at 1085.961 kb on - strand, within ABIE41_RS05245at 1086.008 kb on + strand, within ABIE41_RS05245at 1086.061 kb on + strand, within ABIE41_RS05245at 1086.061 kb on + strand, within ABIE41_RS05245at 1086.062 kb on - strand, within ABIE41_RS05245at 1086.062 kb on - strand, within ABIE41_RS05245at 1086.062 kb on - strand, within ABIE41_RS05245at 1086.085 kb on + strand, within ABIE41_RS05245at 1086.085 kb on + strand, within ABIE41_RS05245at 1086.086 kb on - strand, within ABIE41_RS05245at 1086.086 kb on - strand, within ABIE41_RS05245at 1086.086 kb on - strand, within ABIE41_RS05245at 1086.086 kb on - strand, within ABIE41_RS05245at 1086.194 kb on + strand, within ABIE41_RS05245at 1086.194 kb on + strand, within ABIE41_RS05245at 1086.194 kb on + strand, within ABIE41_RS05245at 1086.194 kb on + strand, within ABIE41_RS05245at 1086.194 kb on + strand, within ABIE41_RS05245at 1086.195 kb on - strand, within ABIE41_RS05245at 1086.195 kb on - strand, within ABIE41_RS05245at 1086.195 kb on - strand, within ABIE41_RS05245at 1086.195 kb on - strand, within ABIE41_RS05245at 1086.200 kb on + strand, within ABIE41_RS05245at 1086.200 kb on + strand, within ABIE41_RS05245at 1086.200 kb on + strand, within ABIE41_RS05245at 1086.200 kb on + strand, within ABIE41_RS05245at 1086.201 kb on - strand, within ABIE41_RS05245at 1086.201 kb on - strand, within ABIE41_RS05245at 1086.400 kb on + strandat 1086.400 kb on + strandat 1086.401 kb on - strandat 1086.401 kb on - strandat 1086.406 kb on + strandat 1086.407 kb on - strandat 1086.727 kb on + strand, within ABIE41_RS05250at 1086.727 kb on + strand, within ABIE41_RS05250at 1086.728 kb on - strand, within ABIE41_RS05250at 1086.835 kb on + strand, within ABIE41_RS05250at 1086.836 kb on - strand, within ABIE41_RS05250at 1086.836 kb on - strand, within ABIE41_RS05250at 1086.836 kb on - strand, within ABIE41_RS05250at 1086.836 kb on - strand, within ABIE41_RS05250at 1086.836 kb on - strand, within ABIE41_RS05250at 1086.934 kb on + strand, within ABIE41_RS05250at 1087.031 kb on - strand, within ABIE41_RS05250at 1087.031 kb on - strand, within ABIE41_RS05250at 1087.031 kb on - strand, within ABIE41_RS05250at 1087.031 kb on - strand, within ABIE41_RS05250at 1087.099 kb on + strand, within ABIE41_RS05250at 1087.099 kb on + strand, within ABIE41_RS05250at 1087.099 kb on + strand, within ABIE41_RS05250at 1087.099 kb on + strand, within ABIE41_RS05250at 1087.100 kb on - strand, within ABIE41_RS05250at 1087.100 kb on - strand, within ABIE41_RS05250at 1087.219 kb on + strand, within ABIE41_RS05250at 1087.219 kb on + strand, within ABIE41_RS05250at 1087.219 kb on + strand, within ABIE41_RS05250at 1087.220 kb on - strand, within ABIE41_RS05250at 1087.276 kb on + strandat 1087.277 kb on - strandat 1087.277 kb on - strandat 1087.378 kb on + strandat 1087.378 kb on + strandat 1087.379 kb on - strandat 1087.379 kb on - strandat 1087.379 kb on - strandat 1087.379 kb on - strandat 1087.379 kb on - strandat 1087.381 kb on - strandat 1087.632 kb on + strand, within ABIE41_RS05255at 1087.633 kb on - strand, within ABIE41_RS05255at 1087.649 kb on + strand, within ABIE41_RS05255at 1087.650 kb on - strand, within ABIE41_RS05255at 1087.650 kb on - strand, within ABIE41_RS05255at 1087.650 kb on - strand, within ABIE41_RS05255at 1087.650 kb on - strand, within ABIE41_RS05255at 1087.659 kb on + strand, within ABIE41_RS05255at 1087.659 kb on + strand, within ABIE41_RS05255at 1087.660 kb on - strand, within ABIE41_RS05255at 1087.660 kb on - strand, within ABIE41_RS05255at 1087.688 kb on + strand, within ABIE41_RS05255at 1087.689 kb on - strand, within ABIE41_RS05255at 1087.689 kb on - strand, within ABIE41_RS05255at 1087.689 kb on - strand, within ABIE41_RS05255at 1087.759 kb on - strand, within ABIE41_RS05255at 1087.947 kb on + strand, within ABIE41_RS05255at 1087.947 kb on + strand, within ABIE41_RS05255at 1087.947 kb on + strand, within ABIE41_RS05255at 1087.947 kb on + strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1088.046 kb on + strand, within ABIE41_RS05255at 1088.046 kb on + strand, within ABIE41_RS05255at 1088.047 kb on - strand, within ABIE41_RS05255at 1088.047 kb on - strand, within ABIE41_RS05255at 1088.047 kb on - strand, within ABIE41_RS05255at 1088.047 kb on - strand, within ABIE41_RS05255at 1088.298 kb on + strand, within ABIE41_RS05255at 1088.298 kb on + strand, within ABIE41_RS05255at 1088.299 kb on - strand, within ABIE41_RS05255at 1088.299 kb on - strand, within ABIE41_RS05255at 1088.299 kb on - strand, within ABIE41_RS05255

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,085,382 + +0.0
1,085,382 + +2.0
1,085,382 + +0.9
1,085,383 - +0.3
1,085,450 + ABIE41_RS05245 0.13 -0.8
1,085,450 + ABIE41_RS05245 0.13 +0.1
1,085,450 + ABIE41_RS05245 0.13 +0.3
1,085,450 + ABIE41_RS05245 0.13 +0.4
1,085,450 + ABIE41_RS05245 0.13 +0.5
1,085,450 + ABIE41_RS05245 0.13 -0.2
1,085,450 + ABIE41_RS05245 0.13 -0.3
1,085,450 + ABIE41_RS05245 0.13 +0.1
1,085,451 - ABIE41_RS05245 0.13 -0.6
1,085,451 - ABIE41_RS05245 0.13 +0.1
1,085,451 - ABIE41_RS05245 0.13 -0.0
1,085,451 - ABIE41_RS05245 0.13 +0.4
1,085,451 - ABIE41_RS05245 0.13 +1.4
1,085,451 - ABIE41_RS05245 0.13 +0.1
1,085,451 - ABIE41_RS05245 0.13 -0.8
1,085,585 + ABIE41_RS05245 0.26 -0.6
1,085,585 + ABIE41_RS05245 0.26 +0.3
1,085,585 + ABIE41_RS05245 0.26 -0.2
1,085,585 + ABIE41_RS05245 0.26 +0.4
1,085,585 + ABIE41_RS05245 0.26 -0.3
1,085,585 + ABIE41_RS05245 0.26 +1.4
1,085,591 + ABIE41_RS05245 0.27 +1.5
1,085,591 + ABIE41_RS05245 0.27 -0.6
1,085,591 + ABIE41_RS05245 0.27 -0.0
1,085,591 + ABIE41_RS05245 0.27 -0.2
1,085,591 + ABIE41_RS05245 0.27 -0.2
1,085,591 + ABIE41_RS05245 0.27 +0.2
1,085,591 + ABIE41_RS05245 0.27 -1.1
1,085,592 - ABIE41_RS05245 0.27 -0.7
1,085,592 - ABIE41_RS05245 0.27 -0.1
1,085,774 + ABIE41_RS05245 0.45 -0.4
1,085,774 + ABIE41_RS05245 0.45 +0.1
1,085,774 + ABIE41_RS05245 0.45 -0.5
1,085,775 - ABIE41_RS05245 0.45 -0.2
1,085,775 - ABIE41_RS05245 0.45 -0.4
1,085,950 + ABIE41_RS05245 0.62 +0.2
1,085,950 + ABIE41_RS05245 0.62 -0.6
1,085,951 - ABIE41_RS05245 0.62 +0.6
1,085,951 - ABIE41_RS05245 0.62 +1.4
1,085,951 - ABIE41_RS05245 0.62 +0.3
1,085,960 + ABIE41_RS05245 0.63 +0.8
1,085,960 + ABIE41_RS05245 0.63 +0.6
1,085,960 + ABIE41_RS05245 0.63 -0.3
1,085,960 + ABIE41_RS05245 0.63 +0.0
1,085,961 - ABIE41_RS05245 0.63 -0.3
1,085,961 - ABIE41_RS05245 0.63 +0.0
1,085,961 - ABIE41_RS05245 0.63 +0.6
1,085,961 - ABIE41_RS05245 0.63 +0.6
1,085,961 - ABIE41_RS05245 0.63 -0.6
1,086,008 + ABIE41_RS05245 0.68 -0.5
1,086,061 + ABIE41_RS05245 0.73 +0.6
1,086,061 + ABIE41_RS05245 0.73 +0.1
1,086,062 - ABIE41_RS05245 0.73 +0.0
1,086,062 - ABIE41_RS05245 0.73 -0.7
1,086,062 - ABIE41_RS05245 0.73 +0.7
1,086,085 + ABIE41_RS05245 0.76 +0.1
1,086,085 + ABIE41_RS05245 0.76 -0.2
1,086,086 - ABIE41_RS05245 0.76 +0.3
1,086,086 - ABIE41_RS05245 0.76 -0.1
1,086,086 - ABIE41_RS05245 0.76 +0.8
1,086,086 - ABIE41_RS05245 0.76 -0.2
1,086,194 + ABIE41_RS05245 0.86 -0.8
1,086,194 + ABIE41_RS05245 0.86 +0.5
1,086,194 + ABIE41_RS05245 0.86 +0.8
1,086,194 + ABIE41_RS05245 0.86 +0.0
1,086,194 + ABIE41_RS05245 0.86 -0.2
1,086,195 - ABIE41_RS05245 0.86 +1.4
1,086,195 - ABIE41_RS05245 0.86 +1.0
1,086,195 - ABIE41_RS05245 0.86 +0.9
1,086,195 - ABIE41_RS05245 0.86 -0.4
1,086,200 + ABIE41_RS05245 0.87 +0.3
1,086,200 + ABIE41_RS05245 0.87 +0.1
1,086,200 + ABIE41_RS05245 0.87 -0.4
1,086,200 + ABIE41_RS05245 0.87 +1.1
1,086,201 - ABIE41_RS05245 0.87 +1.8
1,086,201 - ABIE41_RS05245 0.87 +0.3
1,086,400 + +0.1
1,086,400 + -0.4
1,086,401 - -0.2
1,086,401 - -0.4
1,086,406 + +1.2
1,086,407 - -0.3
1,086,727 + ABIE41_RS05250 0.38 +0.6
1,086,727 + ABIE41_RS05250 0.38 +0.0
1,086,728 - ABIE41_RS05250 0.38 +0.3
1,086,835 + ABIE41_RS05250 0.48 -0.5
1,086,836 - ABIE41_RS05250 0.48 +0.7
1,086,836 - ABIE41_RS05250 0.48 -0.4
1,086,836 - ABIE41_RS05250 0.48 +0.5
1,086,836 - ABIE41_RS05250 0.48 +0.2
1,086,836 - ABIE41_RS05250 0.48 +1.4
1,086,934 + ABIE41_RS05250 0.58 +0.0
1,087,031 - ABIE41_RS05250 0.67 +1.4
1,087,031 - ABIE41_RS05250 0.67 -1.7
1,087,031 - ABIE41_RS05250 0.67 -0.4
1,087,031 - ABIE41_RS05250 0.67 -0.6
1,087,099 + ABIE41_RS05250 0.73 +1.1
1,087,099 + ABIE41_RS05250 0.73 -0.9
1,087,099 + ABIE41_RS05250 0.73 -0.5
1,087,099 + ABIE41_RS05250 0.73 +0.2
1,087,100 - ABIE41_RS05250 0.73 -0.8
1,087,100 - ABIE41_RS05250 0.73 -0.3
1,087,219 + ABIE41_RS05250 0.85 +0.2
1,087,219 + ABIE41_RS05250 0.85 +0.0
1,087,219 + ABIE41_RS05250 0.85 +0.4
1,087,220 - ABIE41_RS05250 0.85 +0.1
1,087,276 + +0.4
1,087,277 - +0.8
1,087,277 - -0.3
1,087,378 + -0.6
1,087,378 + +0.3
1,087,379 - +0.1
1,087,379 - +0.2
1,087,379 - +0.7
1,087,379 - -0.2
1,087,379 - +0.1
1,087,381 - -0.4
1,087,632 + ABIE41_RS05255 0.23 -0.2
1,087,633 - ABIE41_RS05255 0.23 +0.2
1,087,649 + ABIE41_RS05255 0.25 +0.3
1,087,650 - ABIE41_RS05255 0.25 -0.3
1,087,650 - ABIE41_RS05255 0.25 +0.6
1,087,650 - ABIE41_RS05255 0.25 +0.5
1,087,650 - ABIE41_RS05255 0.25 -0.5
1,087,659 + ABIE41_RS05255 0.26 -0.5
1,087,659 + ABIE41_RS05255 0.26 +0.3
1,087,660 - ABIE41_RS05255 0.26 +1.0
1,087,660 - ABIE41_RS05255 0.26 +0.1
1,087,688 + ABIE41_RS05255 0.29 +0.4
1,087,689 - ABIE41_RS05255 0.29 +0.4
1,087,689 - ABIE41_RS05255 0.29 +1.4
1,087,689 - ABIE41_RS05255 0.29 +1.5
1,087,759 - ABIE41_RS05255 0.35 -0.1
1,087,947 + ABIE41_RS05255 0.53 -0.1
1,087,947 + ABIE41_RS05255 0.53 -0.4
1,087,947 + ABIE41_RS05255 0.53 +0.2
1,087,947 + ABIE41_RS05255 0.53 +1.2
1,087,948 - ABIE41_RS05255 0.53 -0.4
1,087,948 - ABIE41_RS05255 0.53 +0.2
1,087,948 - ABIE41_RS05255 0.53 +0.5
1,087,948 - ABIE41_RS05255 0.53 -0.7
1,087,948 - ABIE41_RS05255 0.53 +0.7
1,087,948 - ABIE41_RS05255 0.53 +0.3
1,087,948 - ABIE41_RS05255 0.53 -0.7
1,087,948 - ABIE41_RS05255 0.53 +0.4
1,087,948 - ABIE41_RS05255 0.53 +0.8
1,088,046 + ABIE41_RS05255 0.62 +0.1
1,088,046 + ABIE41_RS05255 0.62 +0.1
1,088,047 - ABIE41_RS05255 0.62 +0.2
1,088,047 - ABIE41_RS05255 0.62 -0.4
1,088,047 - ABIE41_RS05255 0.62 +1.0
1,088,047 - ABIE41_RS05255 0.62 -0.1
1,088,298 + ABIE41_RS05255 0.86 +1.2
1,088,298 + ABIE41_RS05255 0.86 -0.3
1,088,299 - ABIE41_RS05255 0.86 -1.0
1,088,299 - ABIE41_RS05255 0.86 +0.5
1,088,299 - ABIE41_RS05255 0.86 +1.4

Or see this region's nucleotide sequence