Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04980

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04970 and ABIE41_RS04975 overlap by 4 nucleotidesABIE41_RS04975 and ABIE41_RS04980 are separated by 2 nucleotidesABIE41_RS04980 and ABIE41_RS04985 are separated by 316 nucleotides ABIE41_RS04970: ABIE41_RS04970 - heme ABC exporter ATP-binding protein CcmA, at 1,036,157 to 1,036,777 _RS04970 ABIE41_RS04975: ABIE41_RS04975 - heme exporter protein CcmB, at 1,036,774 to 1,037,442 _RS04975 ABIE41_RS04980: ABIE41_RS04980 - hypothetical protein, at 1,037,445 to 1,037,687 _RS04980 ABIE41_RS04985: ABIE41_RS04985 - heme ABC transporter permease, at 1,038,004 to 1,038,765 _RS04985 Position (kb) 1037 1038Strain fitness (log2 ratio) -1 0 1 2at 1037.440 kb on + strandat 1037.440 kb on + strandat 1037.440 kb on + strandat 1037.440 kb on + strandat 1037.440 kb on + strandat 1037.441 kb on - strandat 1037.567 kb on + strand, within ABIE41_RS04980at 1037.567 kb on + strand, within ABIE41_RS04980at 1037.567 kb on + strand, within ABIE41_RS04980at 1037.568 kb on - strand, within ABIE41_RS04980at 1037.568 kb on - strand, within ABIE41_RS04980at 1037.755 kb on - strandat 1037.953 kb on + strandat 1037.953 kb on + strandat 1037.953 kb on + strandat 1037.953 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,037,440 + -0.2
1,037,440 + -1.4
1,037,440 + +0.5
1,037,440 + -1.5
1,037,440 + -0.4
1,037,441 - +1.8
1,037,567 + ABIE41_RS04980 0.50 -0.8
1,037,567 + ABIE41_RS04980 0.50 -0.2
1,037,567 + ABIE41_RS04980 0.50 -0.1
1,037,568 - ABIE41_RS04980 0.51 -0.8
1,037,568 - ABIE41_RS04980 0.51 +1.1
1,037,755 - +0.2
1,037,953 + -1.6
1,037,953 + +1.0
1,037,953 + -0.2
1,037,953 + +0.1

Or see this region's nucleotide sequence