Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25565

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS25560 and ABID97_RS25565 are separated by 43 nucleotidesABID97_RS25565 and ABID97_RS25570 overlap by 12 nucleotides ABID97_RS25560: ABID97_RS25560 - alpha/beta hydrolase, at 32,075 to 33,010 _RS25560 ABID97_RS25565: ABID97_RS25565 - NADP-dependent oxidoreductase, at 33,054 to 33,998 _RS25565 ABID97_RS25570: ABID97_RS25570 - alkene reductase, at 33,987 to 35,048 _RS25570 Position (kb) 33 34Strain fitness (log2 ratio) -1 0 1at 32.140 kb on + strandat 32.140 kb on + strandat 32.193 kb on - strand, within ABID97_RS25560at 32.474 kb on + strand, within ABID97_RS25560at 33.055 kb on + strandat 33.347 kb on - strand, within ABID97_RS25565at 33.437 kb on - strand, within ABID97_RS25565at 33.688 kb on + strand, within ABID97_RS25565at 33.689 kb on - strand, within ABID97_RS25565at 34.036 kb on + strandat 34.271 kb on - strand, within ABID97_RS25570at 34.307 kb on - strand, within ABID97_RS25570at 34.312 kb on + strand, within ABID97_RS25570at 34.831 kb on + strand, within ABID97_RS25570at 34.832 kb on - strand, within ABID97_RS25570at 34.853 kb on - strand, within ABID97_RS25570at 34.922 kb on - strand, within ABID97_RS25570at 34.924 kb on + strand, within ABID97_RS25570at 34.924 kb on + strand, within ABID97_RS25570at 34.925 kb on - strand, within ABID97_RS25570

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
32,140 + -0.1
32,140 + +0.2
32,193 - ABID97_RS25560 0.13 +0.5
32,474 + ABID97_RS25560 0.43 +0.1
33,055 + -0.1
33,347 - ABID97_RS25565 0.31 -0.0
33,437 - ABID97_RS25565 0.41 +0.6
33,688 + ABID97_RS25565 0.67 -0.5
33,689 - ABID97_RS25565 0.67 +0.3
34,036 + +0.6
34,271 - ABID97_RS25570 0.27 -0.1
34,307 - ABID97_RS25570 0.30 -0.7
34,312 + ABID97_RS25570 0.31 +0.2
34,831 + ABID97_RS25570 0.79 +0.3
34,832 - ABID97_RS25570 0.80 +0.0
34,853 - ABID97_RS25570 0.82 +0.3
34,922 - ABID97_RS25570 0.88 -0.0
34,924 + ABID97_RS25570 0.88 -0.9
34,924 + ABID97_RS25570 0.88 -0.5
34,925 - ABID97_RS25570 0.88 -0.3

Or see this region's nucleotide sequence