Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09630

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09610 and ABID97_RS09615 are separated by 9 nucleotidesABID97_RS09615 and ABID97_RS09620 are separated by 43 nucleotidesABID97_RS09620 and ABID97_RS09625 are separated by 109 nucleotidesABID97_RS09625 and ABID97_RS09630 overlap by 4 nucleotidesABID97_RS09630 and ABID97_RS09635 are separated by 86 nucleotides ABID97_RS09610: ABID97_RS09610 - Cro/CI family transcriptional regulator, at 2,014,881 to 2,015,123 _RS09610 ABID97_RS09615: ABID97_RS09615 - hypothetical protein, at 2,015,133 to 2,015,375 _RS09615 ABID97_RS09620: ABID97_RS09620 - hypothetical protein, at 2,015,419 to 2,015,685 _RS09620 ABID97_RS09625: ABID97_RS09625 - hypothetical protein, at 2,015,795 to 2,016,112 _RS09625 ABID97_RS09630: ABID97_RS09630 - hypothetical protein, at 2,016,109 to 2,017,041 _RS09630 ABID97_RS09635: ABID97_RS09635 - DEAD/DEAH box helicase family protein, at 2,017,128 to 2,018,585 _RS09635 Position (kb) 2016 2017 2018Strain fitness (log2 ratio) -1 0 1at 2015.369 kb on - strandat 2015.627 kb on - strand, within ABID97_RS09620at 2015.697 kb on - strandat 2015.712 kb on + strandat 2015.712 kb on + strandat 2015.713 kb on - strandat 2015.734 kb on - strandat 2015.734 kb on - strandat 2015.734 kb on - strandat 2015.810 kb on + strandat 2015.811 kb on - strandat 2016.118 kb on + strandat 2016.259 kb on + strand, within ABID97_RS09630at 2016.260 kb on - strand, within ABID97_RS09630at 2016.459 kb on - strand, within ABID97_RS09630at 2016.929 kb on - strand, within ABID97_RS09630at 2017.186 kb on - strandat 2017.948 kb on + strand, within ABID97_RS09635at 2017.948 kb on + strand, within ABID97_RS09635at 2017.949 kb on - strand, within ABID97_RS09635

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,015,369 - -1.0
2,015,627 - ABID97_RS09620 0.78 -0.0
2,015,697 - +0.7
2,015,712 + -0.5
2,015,712 + -0.7
2,015,713 - -0.7
2,015,734 - +0.8
2,015,734 - +0.2
2,015,734 - -0.5
2,015,810 + +0.1
2,015,811 - +1.0
2,016,118 + +0.3
2,016,259 + ABID97_RS09630 0.16 -0.7
2,016,260 - ABID97_RS09630 0.16 +0.0
2,016,459 - ABID97_RS09630 0.38 -0.5
2,016,929 - ABID97_RS09630 0.88 -0.4
2,017,186 - -0.8
2,017,948 + ABID97_RS09635 0.56 +0.8
2,017,948 + ABID97_RS09635 0.56 -0.1
2,017,949 - ABID97_RS09635 0.56 +1.0

Or see this region's nucleotide sequence