Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4818

Experiment: Green bean; epiphytic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4817 and Psyr_4818 are separated by 163 nucleotidesPsyr_4818 and Psyr_4819 are separated by 32 nucleotidesPsyr_4819 and Psyr_4820 overlap by 4 nucleotides Psyr_4817: Psyr_4817 - L-glutamine synthetase, at 5,714,118 to 5,715,524 _4817 Psyr_4818: Psyr_4818 - chorismate mutase, at 5,715,688 to 5,716,245 _4818 Psyr_4819: Psyr_4819 - conserved hypothetical protein, at 5,716,278 to 5,716,859 _4819 Psyr_4820: Psyr_4820 - conserved hypothetical protein, at 5,716,856 to 5,717,488 _4820 Position (kb) 5715 5716 5717Strain fitness (log2 ratio) -2 -1 0 1 2at 5715.696 kb on + strandat 5715.735 kb on + strandat 5715.736 kb on - strandat 5715.975 kb on + strand, within Psyr_4818at 5716.270 kb on - strandat 5716.284 kb on + strandat 5716.284 kb on + strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.285 kb on - strandat 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.383 kb on + strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.384 kb on - strand, within Psyr_4819at 5716.385 kb on + strand, within Psyr_4819at 5716.385 kb on + strand, within Psyr_4819at 5716.385 kb on + strand, within Psyr_4819at 5716.385 kb on + strand, within Psyr_4819at 5716.385 kb on + strand, within Psyr_4819at 5716.385 kb on + strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.386 kb on - strand, within Psyr_4819at 5716.389 kb on + strand, within Psyr_4819at 5716.389 kb on + strand, within Psyr_4819at 5716.390 kb on - strand, within Psyr_4819at 5716.390 kb on - strand, within Psyr_4819at 5716.390 kb on - strand, within Psyr_4819at 5716.390 kb on - strand, within Psyr_4819at 5716.390 kb on - strand, within Psyr_4819at 5716.390 kb on - strand, within Psyr_4819at 5716.390 kb on - strand, within Psyr_4819at 5716.463 kb on - strand, within Psyr_4819at 5716.831 kb on + strandat 5716.832 kb on - strandat 5716.840 kb on + strandat 5716.840 kb on + strandat 5716.931 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.937 kb on + strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5716.938 kb on - strand, within Psyr_4820at 5717.076 kb on + strand, within Psyr_4820at 5717.076 kb on + strand, within Psyr_4820at 5717.132 kb on - strand, within Psyr_4820at 5717.188 kb on - strand, within Psyr_4820

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Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
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5,715,696 + -0.3
5,715,735 + -0.8
5,715,736 - +1.2
5,715,975 + Psyr_4818 0.51 +1.0
5,716,270 - +0.3
5,716,284 + -0.6
5,716,284 + +0.4
5,716,285 - -1.6
5,716,285 - +0.4
5,716,285 - -1.6
5,716,285 - -0.2
5,716,383 + Psyr_4819 0.18 +0.9
5,716,383 + Psyr_4819 0.18 -1.3
5,716,383 + Psyr_4819 0.18 -0.0
5,716,383 + Psyr_4819 0.18 +0.7
5,716,383 + Psyr_4819 0.18 +0.1
5,716,383 + Psyr_4819 0.18 -0.4
5,716,383 + Psyr_4819 0.18 +0.5
5,716,383 + Psyr_4819 0.18 +1.2
5,716,383 + Psyr_4819 0.18 -0.5
5,716,383 + Psyr_4819 0.18 +2.0
5,716,384 - Psyr_4819 0.18 -0.6
5,716,384 - Psyr_4819 0.18 -0.0
5,716,384 - Psyr_4819 0.18 +0.2
5,716,384 - Psyr_4819 0.18 +0.2
5,716,384 - Psyr_4819 0.18 +0.3
5,716,384 - Psyr_4819 0.18 +0.9
5,716,384 - Psyr_4819 0.18 -0.2
5,716,385 + Psyr_4819 0.18 -0.2
5,716,385 + Psyr_4819 0.18 +0.1
5,716,385 + Psyr_4819 0.18 +0.9
5,716,385 + Psyr_4819 0.18 -0.3
5,716,385 + Psyr_4819 0.18 +0.9
5,716,385 + Psyr_4819 0.18 +0.5
5,716,386 - Psyr_4819 0.19 -0.3
5,716,386 - Psyr_4819 0.19 +0.3
5,716,386 - Psyr_4819 0.19 -1.4
5,716,386 - Psyr_4819 0.19 +0.2
5,716,386 - Psyr_4819 0.19 -0.5
5,716,386 - Psyr_4819 0.19 -0.2
5,716,386 - Psyr_4819 0.19 -0.7
5,716,386 - Psyr_4819 0.19 +0.0
5,716,386 - Psyr_4819 0.19 +0.2
5,716,386 - Psyr_4819 0.19 -0.4
5,716,386 - Psyr_4819 0.19 -0.9
5,716,386 - Psyr_4819 0.19 +0.3
5,716,386 - Psyr_4819 0.19 -0.1
5,716,389 + Psyr_4819 0.19 -0.7
5,716,389 + Psyr_4819 0.19 -1.0
5,716,390 - Psyr_4819 0.19 +0.2
5,716,390 - Psyr_4819 0.19 -0.9
5,716,390 - Psyr_4819 0.19 +1.4
5,716,390 - Psyr_4819 0.19 -1.8
5,716,390 - Psyr_4819 0.19 +0.3
5,716,390 - Psyr_4819 0.19 +0.6
5,716,390 - Psyr_4819 0.19 +1.7
5,716,463 - Psyr_4819 0.32 +0.2
5,716,831 + +0.6
5,716,832 - -0.1
5,716,840 + +0.6
5,716,840 + +0.2
5,716,931 + Psyr_4820 0.12 -0.4
5,716,937 + Psyr_4820 0.13 +0.1
5,716,937 + Psyr_4820 0.13 -0.5
5,716,937 + Psyr_4820 0.13 +0.5
5,716,937 + Psyr_4820 0.13 +2.0
5,716,937 + Psyr_4820 0.13 +0.2
5,716,937 + Psyr_4820 0.13 +0.3
5,716,937 + Psyr_4820 0.13 +0.3
5,716,937 + Psyr_4820 0.13 -0.3
5,716,937 + Psyr_4820 0.13 +2.0
5,716,937 + Psyr_4820 0.13 +0.6
5,716,937 + Psyr_4820 0.13 -0.1
5,716,937 + Psyr_4820 0.13 +0.9
5,716,937 + Psyr_4820 0.13 +0.9
5,716,937 + Psyr_4820 0.13 +0.7
5,716,937 + Psyr_4820 0.13 -1.0
5,716,937 + Psyr_4820 0.13 +0.1
5,716,937 + Psyr_4820 0.13 -0.0
5,716,937 + Psyr_4820 0.13 +0.5
5,716,938 - Psyr_4820 0.13 +0.2
5,716,938 - Psyr_4820 0.13 -0.7
5,716,938 - Psyr_4820 0.13 -1.3
5,716,938 - Psyr_4820 0.13 -0.9
5,716,938 - Psyr_4820 0.13 -1.0
5,716,938 - Psyr_4820 0.13 +0.4
5,716,938 - Psyr_4820 0.13 -0.6
5,716,938 - Psyr_4820 0.13 +0.1
5,716,938 - Psyr_4820 0.13 -0.1
5,716,938 - Psyr_4820 0.13 +0.1
5,716,938 - Psyr_4820 0.13 -0.1
5,717,076 + Psyr_4820 0.35 -0.8
5,717,076 + Psyr_4820 0.35 +1.6
5,717,132 - Psyr_4820 0.44 +0.5
5,717,188 - Psyr_4820 0.52 +2.2

Or see this region's nucleotide sequence