Experiment: Green bean; epiphytic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4746 and Psyr_4747 are separated by 9 nucleotides Psyr_4747 and Psyr_4748 are separated by 437 nucleotides Psyr_4748 and Psyr_4749 are separated by 118 nucleotides
Psyr_4746: Psyr_4746 - hypothetical protein, at 5,622,822 to 5,623,067
_4746
Psyr_4747: Psyr_4747 - hypothetical protein, at 5,623,077 to 5,623,325
_4747
Psyr_4748: Psyr_4748 - RNA polymerase, sigma 32 subunit, RpoH, at 5,623,763 to 5,624,617
_4748
Psyr_4749: Psyr_4749 - cell division protein FtsX, at 5,624,736 to 5,625,770
_4749
Position (kb) 5623
5624
5625 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5623.649 kb on + strand at 5623.650 kb on - strand at 5623.650 kb on - strand at 5624.644 kb on - strand at 5624.727 kb on - strand at 5624.790 kb on - strand at 5624.792 kb on - strand at 5624.792 kb on - strand at 5624.792 kb on - strand at 5624.797 kb on - strand at 5624.870 kb on - strand, within Psyr_4749 at 5624.918 kb on - strand, within Psyr_4749 at 5624.918 kb on - strand, within Psyr_4749 at 5624.959 kb on + strand, within Psyr_4749 at 5624.972 kb on + strand, within Psyr_4749 at 5624.972 kb on + strand, within Psyr_4749 at 5624.973 kb on - strand, within Psyr_4749 at 5624.974 kb on + strand, within Psyr_4749 at 5624.974 kb on + strand, within Psyr_4749 at 5624.974 kb on + strand, within Psyr_4749 at 5624.974 kb on + strand, within Psyr_4749 at 5624.974 kb on + strand, within Psyr_4749 at 5624.974 kb on + strand, within Psyr_4749 at 5624.975 kb on - strand, within Psyr_4749 at 5624.975 kb on - strand, within Psyr_4749 at 5624.975 kb on - strand, within Psyr_4749 at 5624.975 kb on - strand, within Psyr_4749 at 5624.975 kb on - strand, within Psyr_4749 at 5624.975 kb on - strand, within Psyr_4749 at 5624.975 kb on - strand, within Psyr_4749 at 5624.995 kb on + strand, within Psyr_4749 at 5624.995 kb on + strand, within Psyr_4749 at 5624.995 kb on + strand, within Psyr_4749 at 5624.995 kb on + strand, within Psyr_4749 at 5624.995 kb on + strand, within Psyr_4749 at 5624.995 kb on + strand, within Psyr_4749 at 5624.995 kb on + strand, within Psyr_4749 at 5624.996 kb on - strand, within Psyr_4749 at 5624.996 kb on - strand, within Psyr_4749 at 5624.996 kb on - strand, within Psyr_4749 at 5624.996 kb on - strand, within Psyr_4749 at 5625.057 kb on + strand, within Psyr_4749 at 5625.057 kb on + strand, within Psyr_4749 at 5625.058 kb on - strand, within Psyr_4749 at 5625.079 kb on - strand, within Psyr_4749 at 5625.079 kb on - strand, within Psyr_4749 at 5625.079 kb on - strand, within Psyr_4749 at 5625.192 kb on + strand, within Psyr_4749 at 5625.192 kb on + strand, within Psyr_4749 at 5625.192 kb on + strand, within Psyr_4749 at 5625.193 kb on - strand, within Psyr_4749 at 5625.193 kb on - strand, within Psyr_4749 at 5625.198 kb on - strand, within Psyr_4749 at 5625.219 kb on - strand, within Psyr_4749 at 5625.264 kb on + strand, within Psyr_4749 at 5625.265 kb on - strand, within Psyr_4749 at 5625.265 kb on - strand, within Psyr_4749 at 5625.265 kb on - strand, within Psyr_4749 at 5625.364 kb on + strand, within Psyr_4749 at 5625.364 kb on + strand, within Psyr_4749 at 5625.364 kb on + strand, within Psyr_4749 at 5625.365 kb on - strand, within Psyr_4749 at 5625.365 kb on - strand, within Psyr_4749 at 5625.365 kb on - strand, within Psyr_4749 at 5625.365 kb on - strand, within Psyr_4749 at 5625.448 kb on + strand, within Psyr_4749 at 5625.448 kb on + strand, within Psyr_4749 at 5625.449 kb on - strand, within Psyr_4749 at 5625.449 kb on - strand, within Psyr_4749 at 5625.449 kb on - strand, within Psyr_4749 at 5625.560 kb on + strand, within Psyr_4749
Per-strain Table
Position Strand Gene LocusTag Fraction Green bean; epiphytic remove 5,623,649 + +0.0 5,623,650 - -2.3 5,623,650 - -0.8 5,624,644 - -0.4 5,624,727 - +1.3 5,624,790 - +0.3 5,624,792 - -0.1 5,624,792 - -0.2 5,624,792 - +2.0 5,624,797 - -0.9 5,624,870 - Psyr_4749 0.13 -0.2 5,624,918 - Psyr_4749 0.18 -0.1 5,624,918 - Psyr_4749 0.18 -0.0 5,624,959 + Psyr_4749 0.22 +0.7 5,624,972 + Psyr_4749 0.23 +0.4 5,624,972 + Psyr_4749 0.23 -1.2 5,624,973 - Psyr_4749 0.23 -0.2 5,624,974 + Psyr_4749 0.23 -1.1 5,624,974 + Psyr_4749 0.23 +2.0 5,624,974 + Psyr_4749 0.23 +0.0 5,624,974 + Psyr_4749 0.23 +1.4 5,624,974 + Psyr_4749 0.23 -0.0 5,624,974 + Psyr_4749 0.23 +0.8 5,624,975 - Psyr_4749 0.23 -0.6 5,624,975 - Psyr_4749 0.23 -0.1 5,624,975 - Psyr_4749 0.23 -1.2 5,624,975 - Psyr_4749 0.23 +1.0 5,624,975 - Psyr_4749 0.23 -0.5 5,624,975 - Psyr_4749 0.23 +0.2 5,624,975 - Psyr_4749 0.23 +0.1 5,624,995 + Psyr_4749 0.25 -0.3 5,624,995 + Psyr_4749 0.25 -0.9 5,624,995 + Psyr_4749 0.25 +0.4 5,624,995 + Psyr_4749 0.25 -1.4 5,624,995 + Psyr_4749 0.25 +0.1 5,624,995 + Psyr_4749 0.25 +2.4 5,624,995 + Psyr_4749 0.25 +1.1 5,624,996 - Psyr_4749 0.25 +2.1 5,624,996 - Psyr_4749 0.25 -0.5 5,624,996 - Psyr_4749 0.25 -0.4 5,624,996 - Psyr_4749 0.25 -0.1 5,625,057 + Psyr_4749 0.31 +0.4 5,625,057 + Psyr_4749 0.31 -0.1 5,625,058 - Psyr_4749 0.31 +2.4 5,625,079 - Psyr_4749 0.33 -0.9 5,625,079 - Psyr_4749 0.33 -0.2 5,625,079 - Psyr_4749 0.33 +1.2 5,625,192 + Psyr_4749 0.44 +0.8 5,625,192 + Psyr_4749 0.44 -0.6 5,625,192 + Psyr_4749 0.44 -0.5 5,625,193 - Psyr_4749 0.44 -1.0 5,625,193 - Psyr_4749 0.44 +0.9 5,625,198 - Psyr_4749 0.45 +0.9 5,625,219 - Psyr_4749 0.47 +0.3 5,625,264 + Psyr_4749 0.51 +0.0 5,625,265 - Psyr_4749 0.51 +1.4 5,625,265 - Psyr_4749 0.51 -0.1 5,625,265 - Psyr_4749 0.51 -1.0 5,625,364 + Psyr_4749 0.61 -0.7 5,625,364 + Psyr_4749 0.61 +0.5 5,625,364 + Psyr_4749 0.61 +0.6 5,625,365 - Psyr_4749 0.61 +0.4 5,625,365 - Psyr_4749 0.61 +0.8 5,625,365 - Psyr_4749 0.61 +1.8 5,625,365 - Psyr_4749 0.61 +4.8 5,625,448 + Psyr_4749 0.69 +0.4 5,625,448 + Psyr_4749 0.69 +0.1 5,625,449 - Psyr_4749 0.69 +0.7 5,625,449 - Psyr_4749 0.69 +1.0 5,625,449 - Psyr_4749 0.69 -0.7 5,625,560 + Psyr_4749 0.80 +0.1
Or see this region's nucleotide sequence