Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4490

Experiment: Green bean; epiphytic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4489 and Psyr_4490 are separated by 5 nucleotidesPsyr_4490 and Psyr_4491 are separated by 108 nucleotidesPsyr_4491 and Psyr_4492 are separated by 33 nucleotides Psyr_4489: Psyr_4489 - putative cytoplasmic protein, at 5,351,048 to 5,352,115 _4489 Psyr_4490: Psyr_4490 - transcriptional regulator, DeoR family, at 5,352,121 to 5,352,885 _4490 Psyr_4491: Psyr_4491 - Deoxyribose-phosphate aldolase, at 5,352,994 to 5,353,674 _4491 Psyr_4492: Psyr_4492 - hypothetical protein, at 5,353,708 to 5,353,956 _4492 Position (kb) 5352 5353Strain fitness (log2 ratio) -2 -1 0 1 2at 5351.150 kb on + strandat 5351.150 kb on + strandat 5351.272 kb on + strand, within Psyr_4489at 5351.272 kb on + strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.315 kb on + strand, within Psyr_4489at 5351.315 kb on + strand, within Psyr_4489at 5351.316 kb on - strand, within Psyr_4489at 5351.316 kb on - strand, within Psyr_4489at 5351.457 kb on - strand, within Psyr_4489at 5351.457 kb on - strand, within Psyr_4489at 5351.477 kb on + strand, within Psyr_4489at 5351.477 kb on + strand, within Psyr_4489at 5351.477 kb on + strand, within Psyr_4489at 5351.478 kb on - strand, within Psyr_4489at 5351.478 kb on - strand, within Psyr_4489at 5351.478 kb on - strand, within Psyr_4489at 5351.478 kb on - strand, within Psyr_4489at 5351.483 kb on + strand, within Psyr_4489at 5351.484 kb on - strand, within Psyr_4489at 5351.484 kb on - strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.624 kb on + strand, within Psyr_4489at 5351.624 kb on + strand, within Psyr_4489at 5351.624 kb on + strand, within Psyr_4489at 5351.624 kb on + strand, within Psyr_4489at 5351.624 kb on + strand, within Psyr_4489at 5351.625 kb on - strand, within Psyr_4489at 5351.625 kb on - strand, within Psyr_4489at 5351.625 kb on - strand, within Psyr_4489at 5351.625 kb on - strand, within Psyr_4489at 5351.631 kb on - strand, within Psyr_4489at 5351.631 kb on - strand, within Psyr_4489at 5351.732 kb on + strand, within Psyr_4489at 5351.732 kb on + strand, within Psyr_4489at 5351.733 kb on - strand, within Psyr_4489at 5351.733 kb on - strand, within Psyr_4489at 5351.733 kb on - strand, within Psyr_4489at 5351.734 kb on + strand, within Psyr_4489at 5351.792 kb on + strand, within Psyr_4489at 5351.792 kb on + strand, within Psyr_4489at 5351.793 kb on - strand, within Psyr_4489at 5351.793 kb on - strand, within Psyr_4489at 5351.793 kb on - strand, within Psyr_4489at 5351.793 kb on - strand, within Psyr_4489at 5351.793 kb on - strand, within Psyr_4489at 5351.888 kb on + strand, within Psyr_4489at 5351.888 kb on + strand, within Psyr_4489at 5351.888 kb on + strand, within Psyr_4489at 5351.888 kb on + strand, within Psyr_4489at 5351.889 kb on - strand, within Psyr_4489at 5351.889 kb on - strand, within Psyr_4489at 5351.889 kb on - strand, within Psyr_4489at 5351.889 kb on - strand, within Psyr_4489at 5352.122 kb on + strandat 5352.122 kb on + strandat 5352.123 kb on - strandat 5352.592 kb on + strand, within Psyr_4490at 5352.593 kb on - strand, within Psyr_4490at 5352.722 kb on + strand, within Psyr_4490at 5352.723 kb on - strand, within Psyr_4490at 5352.935 kb on + strandat 5352.944 kb on - strandat 5353.111 kb on + strand, within Psyr_4491at 5353.111 kb on + strand, within Psyr_4491at 5353.112 kb on - strand, within Psyr_4491at 5353.530 kb on - strand, within Psyr_4491at 5353.670 kb on - strandat 5353.709 kb on + strandat 5353.709 kb on + strandat 5353.709 kb on + strandat 5353.710 kb on - strandat 5353.710 kb on - strandat 5353.710 kb on - strandat 5353.710 kb on - strandat 5353.710 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
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5,351,150 + +0.8
5,351,150 + -0.9
5,351,272 + Psyr_4489 0.21 -0.5
5,351,272 + Psyr_4489 0.21 +0.1
5,351,273 - Psyr_4489 0.21 +0.1
5,351,273 - Psyr_4489 0.21 +1.1
5,351,273 - Psyr_4489 0.21 +0.1
5,351,273 - Psyr_4489 0.21 -0.2
5,351,273 - Psyr_4489 0.21 +0.8
5,351,273 - Psyr_4489 0.21 +0.3
5,351,273 - Psyr_4489 0.21 +0.9
5,351,273 - Psyr_4489 0.21 -0.6
5,351,315 + Psyr_4489 0.25 +0.1
5,351,315 + Psyr_4489 0.25 +0.9
5,351,316 - Psyr_4489 0.25 +1.5
5,351,316 - Psyr_4489 0.25 +1.4
5,351,457 - Psyr_4489 0.38 -0.3
5,351,457 - Psyr_4489 0.38 -1.9
5,351,477 + Psyr_4489 0.40 -1.1
5,351,477 + Psyr_4489 0.40 +0.9
5,351,477 + Psyr_4489 0.40 -0.9
5,351,478 - Psyr_4489 0.40 +2.3
5,351,478 - Psyr_4489 0.40 +0.3
5,351,478 - Psyr_4489 0.40 +0.3
5,351,478 - Psyr_4489 0.40 -1.0
5,351,483 + Psyr_4489 0.41 -0.3
5,351,484 - Psyr_4489 0.41 +0.3
5,351,484 - Psyr_4489 0.41 +1.5
5,351,606 + Psyr_4489 0.52 -0.5
5,351,606 + Psyr_4489 0.52 +0.3
5,351,606 + Psyr_4489 0.52 +0.8
5,351,606 + Psyr_4489 0.52 -0.5
5,351,606 + Psyr_4489 0.52 +0.4
5,351,606 + Psyr_4489 0.52 -2.2
5,351,606 + Psyr_4489 0.52 +0.1
5,351,606 + Psyr_4489 0.52 -0.7
5,351,606 + Psyr_4489 0.52 +0.1
5,351,606 + Psyr_4489 0.52 -0.0
5,351,606 + Psyr_4489 0.52 +0.4
5,351,606 + Psyr_4489 0.52 -0.5
5,351,607 - Psyr_4489 0.52 +0.5
5,351,607 - Psyr_4489 0.52 +0.5
5,351,607 - Psyr_4489 0.52 +0.2
5,351,607 - Psyr_4489 0.52 -0.9
5,351,607 - Psyr_4489 0.52 +0.0
5,351,607 - Psyr_4489 0.52 +1.9
5,351,607 - Psyr_4489 0.52 +0.3
5,351,607 - Psyr_4489 0.52 +0.7
5,351,607 - Psyr_4489 0.52 +1.1
5,351,607 - Psyr_4489 0.52 +0.3
5,351,607 - Psyr_4489 0.52 +0.9
5,351,607 - Psyr_4489 0.52 -0.3
5,351,607 - Psyr_4489 0.52 -0.1
5,351,607 - Psyr_4489 0.52 -0.2
5,351,624 + Psyr_4489 0.54 +1.5
5,351,624 + Psyr_4489 0.54 +0.3
5,351,624 + Psyr_4489 0.54 -0.7
5,351,624 + Psyr_4489 0.54 -0.3
5,351,624 + Psyr_4489 0.54 -0.9
5,351,625 - Psyr_4489 0.54 -1.1
5,351,625 - Psyr_4489 0.54 -0.3
5,351,625 - Psyr_4489 0.54 +0.4
5,351,625 - Psyr_4489 0.54 -0.0
5,351,631 - Psyr_4489 0.55 +0.5
5,351,631 - Psyr_4489 0.55 -0.5
5,351,732 + Psyr_4489 0.64 -1.2
5,351,732 + Psyr_4489 0.64 +0.1
5,351,733 - Psyr_4489 0.64 +1.0
5,351,733 - Psyr_4489 0.64 -0.3
5,351,733 - Psyr_4489 0.64 +0.8
5,351,734 + Psyr_4489 0.64 -0.1
5,351,792 + Psyr_4489 0.70 +0.7
5,351,792 + Psyr_4489 0.70 -0.2
5,351,793 - Psyr_4489 0.70 +1.1
5,351,793 - Psyr_4489 0.70 +0.8
5,351,793 - Psyr_4489 0.70 +1.9
5,351,793 - Psyr_4489 0.70 +0.5
5,351,793 - Psyr_4489 0.70 +1.9
5,351,888 + Psyr_4489 0.79 -0.9
5,351,888 + Psyr_4489 0.79 +0.4
5,351,888 + Psyr_4489 0.79 +1.1
5,351,888 + Psyr_4489 0.79 +0.3
5,351,889 - Psyr_4489 0.79 +0.8
5,351,889 - Psyr_4489 0.79 -1.0
5,351,889 - Psyr_4489 0.79 +1.1
5,351,889 - Psyr_4489 0.79 +1.6
5,352,122 + -0.5
5,352,122 + -0.6
5,352,123 - +0.9
5,352,592 + Psyr_4490 0.62 +0.5
5,352,593 - Psyr_4490 0.62 -1.2
5,352,722 + Psyr_4490 0.79 -1.2
5,352,723 - Psyr_4490 0.79 -1.1
5,352,935 + -0.5
5,352,944 - +1.1
5,353,111 + Psyr_4491 0.17 -0.9
5,353,111 + Psyr_4491 0.17 +0.1
5,353,112 - Psyr_4491 0.17 +0.1
5,353,530 - Psyr_4491 0.79 -1.2
5,353,670 - +0.3
5,353,709 + +1.7
5,353,709 + +0.5
5,353,709 + +0.3
5,353,710 - -0.1
5,353,710 - +1.2
5,353,710 - -1.1
5,353,710 - -0.2
5,353,710 - +1.1

Or see this region's nucleotide sequence