Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4489

Experiment: Green bean; epiphytic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4488 and Psyr_4489 overlap by 4 nucleotidesPsyr_4489 and Psyr_4490 are separated by 5 nucleotidesPsyr_4490 and Psyr_4491 are separated by 108 nucleotides Psyr_4488: Psyr_4488 - L-fucose permease, at 5,349,720 to 5,351,051 _4488 Psyr_4489: Psyr_4489 - putative cytoplasmic protein, at 5,351,048 to 5,352,115 _4489 Psyr_4490: Psyr_4490 - transcriptional regulator, DeoR family, at 5,352,121 to 5,352,885 _4490 Psyr_4491: Psyr_4491 - Deoxyribose-phosphate aldolase, at 5,352,994 to 5,353,674 _4491 Position (kb) 5351 5352 5353Strain fitness (log2 ratio) -2 -1 0 1 2at 5350.054 kb on - strand, within Psyr_4488at 5350.125 kb on + strand, within Psyr_4488at 5350.125 kb on + strand, within Psyr_4488at 5350.126 kb on - strand, within Psyr_4488at 5350.126 kb on - strand, within Psyr_4488at 5350.215 kb on + strand, within Psyr_4488at 5350.215 kb on + strand, within Psyr_4488at 5350.215 kb on + strand, within Psyr_4488at 5350.215 kb on + strand, within Psyr_4488at 5350.215 kb on + strand, within Psyr_4488at 5350.216 kb on - strand, within Psyr_4488at 5350.216 kb on - strand, within Psyr_4488at 5350.216 kb on - strand, within Psyr_4488at 5350.354 kb on + strand, within Psyr_4488at 5350.360 kb on + strand, within Psyr_4488at 5350.360 kb on + strand, within Psyr_4488at 5350.360 kb on + strand, within Psyr_4488at 5350.360 kb on + strand, within Psyr_4488at 5350.360 kb on + strand, within Psyr_4488at 5350.360 kb on + strand, within Psyr_4488at 5350.361 kb on - strand, within Psyr_4488at 5350.361 kb on - strand, within Psyr_4488at 5350.361 kb on - strand, within Psyr_4488at 5350.361 kb on - strand, within Psyr_4488at 5350.510 kb on - strand, within Psyr_4488at 5350.544 kb on + strand, within Psyr_4488at 5350.621 kb on - strand, within Psyr_4488at 5350.621 kb on - strand, within Psyr_4488at 5350.689 kb on + strand, within Psyr_4488at 5350.689 kb on + strand, within Psyr_4488at 5350.690 kb on - strand, within Psyr_4488at 5350.719 kb on + strand, within Psyr_4488at 5350.724 kb on + strand, within Psyr_4488at 5350.724 kb on + strand, within Psyr_4488at 5350.725 kb on - strand, within Psyr_4488at 5350.725 kb on - strand, within Psyr_4488at 5350.725 kb on - strand, within Psyr_4488at 5350.739 kb on + strand, within Psyr_4488at 5350.740 kb on - strand, within Psyr_4488at 5350.752 kb on + strand, within Psyr_4488at 5350.752 kb on + strand, within Psyr_4488at 5350.752 kb on + strand, within Psyr_4488at 5350.753 kb on - strand, within Psyr_4488at 5350.753 kb on - strand, within Psyr_4488at 5350.803 kb on + strand, within Psyr_4488at 5350.803 kb on + strand, within Psyr_4488at 5350.803 kb on + strand, within Psyr_4488at 5350.803 kb on + strand, within Psyr_4488at 5350.803 kb on + strand, within Psyr_4488at 5350.804 kb on - strand, within Psyr_4488at 5350.804 kb on - strand, within Psyr_4488at 5350.804 kb on - strand, within Psyr_4488at 5350.804 kb on - strand, within Psyr_4488at 5350.804 kb on - strand, within Psyr_4488at 5350.945 kb on - strandat 5350.945 kb on - strandat 5350.979 kb on + strandat 5350.979 kb on + strandat 5350.979 kb on + strandat 5350.980 kb on - strandat 5350.980 kb on - strandat 5350.980 kb on - strandat 5350.980 kb on - strandat 5350.980 kb on - strandat 5350.980 kb on - strandat 5350.983 kb on + strandat 5350.983 kb on + strandat 5350.983 kb on + strandat 5350.983 kb on + strandat 5350.983 kb on + strandat 5350.983 kb on + strandat 5350.983 kb on + strandat 5350.983 kb on + strandat 5350.983 kb on + strandat 5350.983 kb on + strandat 5350.983 kb on + strandat 5350.983 kb on + strandat 5350.983 kb on + strandat 5350.984 kb on - strandat 5350.984 kb on - strandat 5350.984 kb on - strandat 5350.984 kb on - strandat 5350.984 kb on - strandat 5350.984 kb on - strandat 5350.984 kb on - strandat 5350.984 kb on - strandat 5350.984 kb on - strandat 5350.992 kb on + strandat 5350.993 kb on - strandat 5350.993 kb on - strandat 5350.993 kb on - strandat 5350.993 kb on - strandat 5351.054 kb on - strandat 5351.054 kb on - strandat 5351.150 kb on + strandat 5351.150 kb on + strandat 5351.272 kb on + strand, within Psyr_4489at 5351.272 kb on + strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.273 kb on - strand, within Psyr_4489at 5351.315 kb on + strand, within Psyr_4489at 5351.315 kb on + strand, within Psyr_4489at 5351.316 kb on - strand, within Psyr_4489at 5351.316 kb on - strand, within Psyr_4489at 5351.457 kb on - strand, within Psyr_4489at 5351.457 kb on - strand, within Psyr_4489at 5351.477 kb on + strand, within Psyr_4489at 5351.477 kb on + strand, within Psyr_4489at 5351.477 kb on + strand, within Psyr_4489at 5351.478 kb on - strand, within Psyr_4489at 5351.478 kb on - strand, within Psyr_4489at 5351.478 kb on - strand, within Psyr_4489at 5351.478 kb on - strand, within Psyr_4489at 5351.483 kb on + strand, within Psyr_4489at 5351.484 kb on - strand, within Psyr_4489at 5351.484 kb on - strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.606 kb on + strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.607 kb on - strand, within Psyr_4489at 5351.624 kb on + strand, within Psyr_4489at 5351.624 kb on + strand, within Psyr_4489at 5351.624 kb on + strand, within Psyr_4489at 5351.624 kb on + strand, within Psyr_4489at 5351.624 kb on + strand, within Psyr_4489at 5351.625 kb on - strand, within Psyr_4489at 5351.625 kb on - strand, within Psyr_4489at 5351.625 kb on - strand, within Psyr_4489at 5351.625 kb on - strand, within Psyr_4489at 5351.631 kb on - strand, within Psyr_4489at 5351.631 kb on - strand, within Psyr_4489at 5351.732 kb on + strand, within Psyr_4489at 5351.732 kb on + strand, within Psyr_4489at 5351.733 kb on - strand, within Psyr_4489at 5351.733 kb on - strand, within Psyr_4489at 5351.733 kb on - strand, within Psyr_4489at 5351.734 kb on + strand, within Psyr_4489at 5351.792 kb on + strand, within Psyr_4489at 5351.792 kb on + strand, within Psyr_4489at 5351.793 kb on - strand, within Psyr_4489at 5351.793 kb on - strand, within Psyr_4489at 5351.793 kb on - strand, within Psyr_4489at 5351.793 kb on - strand, within Psyr_4489at 5351.793 kb on - strand, within Psyr_4489at 5351.888 kb on + strand, within Psyr_4489at 5351.888 kb on + strand, within Psyr_4489at 5351.888 kb on + strand, within Psyr_4489at 5351.888 kb on + strand, within Psyr_4489at 5351.889 kb on - strand, within Psyr_4489at 5351.889 kb on - strand, within Psyr_4489at 5351.889 kb on - strand, within Psyr_4489at 5351.889 kb on - strand, within Psyr_4489at 5352.122 kb on + strandat 5352.122 kb on + strandat 5352.123 kb on - strandat 5352.592 kb on + strand, within Psyr_4490at 5352.593 kb on - strand, within Psyr_4490at 5352.722 kb on + strand, within Psyr_4490at 5352.723 kb on - strand, within Psyr_4490at 5352.935 kb on + strandat 5352.944 kb on - strandat 5353.111 kb on + strand, within Psyr_4491at 5353.111 kb on + strand, within Psyr_4491at 5353.112 kb on - strand, within Psyr_4491

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Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
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5,350,054 - Psyr_4488 0.25 +0.2
5,350,125 + Psyr_4488 0.30 +0.1
5,350,125 + Psyr_4488 0.30 -1.1
5,350,126 - Psyr_4488 0.30 +0.1
5,350,126 - Psyr_4488 0.30 +0.1
5,350,215 + Psyr_4488 0.37 -0.9
5,350,215 + Psyr_4488 0.37 +1.1
5,350,215 + Psyr_4488 0.37 -0.1
5,350,215 + Psyr_4488 0.37 +0.3
5,350,215 + Psyr_4488 0.37 +1.4
5,350,216 - Psyr_4488 0.37 -0.9
5,350,216 - Psyr_4488 0.37 +1.1
5,350,216 - Psyr_4488 0.37 -0.7
5,350,354 + Psyr_4488 0.48 -1.3
5,350,360 + Psyr_4488 0.48 +0.9
5,350,360 + Psyr_4488 0.48 +1.7
5,350,360 + Psyr_4488 0.48 +0.0
5,350,360 + Psyr_4488 0.48 +0.8
5,350,360 + Psyr_4488 0.48 -0.2
5,350,360 + Psyr_4488 0.48 -0.5
5,350,361 - Psyr_4488 0.48 -0.9
5,350,361 - Psyr_4488 0.48 -0.9
5,350,361 - Psyr_4488 0.48 +0.2
5,350,361 - Psyr_4488 0.48 -0.9
5,350,510 - Psyr_4488 0.59 -0.1
5,350,544 + Psyr_4488 0.62 +0.7
5,350,621 - Psyr_4488 0.68 -0.4
5,350,621 - Psyr_4488 0.68 -1.2
5,350,689 + Psyr_4488 0.73 -1.9
5,350,689 + Psyr_4488 0.73 +1.0
5,350,690 - Psyr_4488 0.73 +1.1
5,350,719 + Psyr_4488 0.75 +0.7
5,350,724 + Psyr_4488 0.75 +0.8
5,350,724 + Psyr_4488 0.75 -0.1
5,350,725 - Psyr_4488 0.75 -0.9
5,350,725 - Psyr_4488 0.75 -0.1
5,350,725 - Psyr_4488 0.75 +1.9
5,350,739 + Psyr_4488 0.77 +0.4
5,350,740 - Psyr_4488 0.77 +0.7
5,350,752 + Psyr_4488 0.77 +0.4
5,350,752 + Psyr_4488 0.77 -2.1
5,350,752 + Psyr_4488 0.77 +1.4
5,350,753 - Psyr_4488 0.78 -0.5
5,350,753 - Psyr_4488 0.78 -2.3
5,350,803 + Psyr_4488 0.81 +0.8
5,350,803 + Psyr_4488 0.81 -0.9
5,350,803 + Psyr_4488 0.81 -1.1
5,350,803 + Psyr_4488 0.81 +0.3
5,350,803 + Psyr_4488 0.81 +1.0
5,350,804 - Psyr_4488 0.81 -0.3
5,350,804 - Psyr_4488 0.81 -0.4
5,350,804 - Psyr_4488 0.81 -0.6
5,350,804 - Psyr_4488 0.81 +1.1
5,350,804 - Psyr_4488 0.81 -0.3
5,350,945 - +1.6
5,350,945 - +0.7
5,350,979 + +0.1
5,350,979 + +1.0
5,350,979 + -0.3
5,350,980 - +0.3
5,350,980 - +1.7
5,350,980 - +0.7
5,350,980 - -1.5
5,350,980 - +0.2
5,350,980 - -0.9
5,350,983 + -0.8
5,350,983 + -1.2
5,350,983 + +0.3
5,350,983 + +0.5
5,350,983 + +0.2
5,350,983 + +0.8
5,350,983 + -0.3
5,350,983 + -0.1
5,350,983 + -1.4
5,350,983 + +0.2
5,350,983 + +1.1
5,350,983 + +1.0
5,350,983 + +0.2
5,350,984 - +0.4
5,350,984 - +0.1
5,350,984 - -0.1
5,350,984 - -0.9
5,350,984 - -1.5
5,350,984 - +0.3
5,350,984 - -1.7
5,350,984 - -0.9
5,350,984 - +1.6
5,350,992 + +0.1
5,350,993 - +1.0
5,350,993 - -1.3
5,350,993 - +0.9
5,350,993 - -0.6
5,351,054 - -0.8
5,351,054 - +1.1
5,351,150 + +0.8
5,351,150 + -0.9
5,351,272 + Psyr_4489 0.21 -0.5
5,351,272 + Psyr_4489 0.21 +0.1
5,351,273 - Psyr_4489 0.21 +0.1
5,351,273 - Psyr_4489 0.21 +1.1
5,351,273 - Psyr_4489 0.21 +0.1
5,351,273 - Psyr_4489 0.21 -0.2
5,351,273 - Psyr_4489 0.21 +0.8
5,351,273 - Psyr_4489 0.21 +0.3
5,351,273 - Psyr_4489 0.21 +0.9
5,351,273 - Psyr_4489 0.21 -0.6
5,351,315 + Psyr_4489 0.25 +0.1
5,351,315 + Psyr_4489 0.25 +0.9
5,351,316 - Psyr_4489 0.25 +1.5
5,351,316 - Psyr_4489 0.25 +1.4
5,351,457 - Psyr_4489 0.38 -0.3
5,351,457 - Psyr_4489 0.38 -1.9
5,351,477 + Psyr_4489 0.40 -1.1
5,351,477 + Psyr_4489 0.40 +0.9
5,351,477 + Psyr_4489 0.40 -0.9
5,351,478 - Psyr_4489 0.40 +2.3
5,351,478 - Psyr_4489 0.40 +0.3
5,351,478 - Psyr_4489 0.40 +0.3
5,351,478 - Psyr_4489 0.40 -1.0
5,351,483 + Psyr_4489 0.41 -0.3
5,351,484 - Psyr_4489 0.41 +0.3
5,351,484 - Psyr_4489 0.41 +1.5
5,351,606 + Psyr_4489 0.52 -0.5
5,351,606 + Psyr_4489 0.52 +0.3
5,351,606 + Psyr_4489 0.52 +0.8
5,351,606 + Psyr_4489 0.52 -0.5
5,351,606 + Psyr_4489 0.52 +0.4
5,351,606 + Psyr_4489 0.52 -2.2
5,351,606 + Psyr_4489 0.52 +0.1
5,351,606 + Psyr_4489 0.52 -0.7
5,351,606 + Psyr_4489 0.52 +0.1
5,351,606 + Psyr_4489 0.52 -0.0
5,351,606 + Psyr_4489 0.52 +0.4
5,351,606 + Psyr_4489 0.52 -0.5
5,351,607 - Psyr_4489 0.52 +0.5
5,351,607 - Psyr_4489 0.52 +0.5
5,351,607 - Psyr_4489 0.52 +0.2
5,351,607 - Psyr_4489 0.52 -0.9
5,351,607 - Psyr_4489 0.52 +0.0
5,351,607 - Psyr_4489 0.52 +1.9
5,351,607 - Psyr_4489 0.52 +0.3
5,351,607 - Psyr_4489 0.52 +0.7
5,351,607 - Psyr_4489 0.52 +1.1
5,351,607 - Psyr_4489 0.52 +0.3
5,351,607 - Psyr_4489 0.52 +0.9
5,351,607 - Psyr_4489 0.52 -0.3
5,351,607 - Psyr_4489 0.52 -0.1
5,351,607 - Psyr_4489 0.52 -0.2
5,351,624 + Psyr_4489 0.54 +1.5
5,351,624 + Psyr_4489 0.54 +0.3
5,351,624 + Psyr_4489 0.54 -0.7
5,351,624 + Psyr_4489 0.54 -0.3
5,351,624 + Psyr_4489 0.54 -0.9
5,351,625 - Psyr_4489 0.54 -1.1
5,351,625 - Psyr_4489 0.54 -0.3
5,351,625 - Psyr_4489 0.54 +0.4
5,351,625 - Psyr_4489 0.54 -0.0
5,351,631 - Psyr_4489 0.55 +0.5
5,351,631 - Psyr_4489 0.55 -0.5
5,351,732 + Psyr_4489 0.64 -1.2
5,351,732 + Psyr_4489 0.64 +0.1
5,351,733 - Psyr_4489 0.64 +1.0
5,351,733 - Psyr_4489 0.64 -0.3
5,351,733 - Psyr_4489 0.64 +0.8
5,351,734 + Psyr_4489 0.64 -0.1
5,351,792 + Psyr_4489 0.70 +0.7
5,351,792 + Psyr_4489 0.70 -0.2
5,351,793 - Psyr_4489 0.70 +1.1
5,351,793 - Psyr_4489 0.70 +0.8
5,351,793 - Psyr_4489 0.70 +1.9
5,351,793 - Psyr_4489 0.70 +0.5
5,351,793 - Psyr_4489 0.70 +1.9
5,351,888 + Psyr_4489 0.79 -0.9
5,351,888 + Psyr_4489 0.79 +0.4
5,351,888 + Psyr_4489 0.79 +1.1
5,351,888 + Psyr_4489 0.79 +0.3
5,351,889 - Psyr_4489 0.79 +0.8
5,351,889 - Psyr_4489 0.79 -1.0
5,351,889 - Psyr_4489 0.79 +1.1
5,351,889 - Psyr_4489 0.79 +1.6
5,352,122 + -0.5
5,352,122 + -0.6
5,352,123 - +0.9
5,352,592 + Psyr_4490 0.62 +0.5
5,352,593 - Psyr_4490 0.62 -1.2
5,352,722 + Psyr_4490 0.79 -1.2
5,352,723 - Psyr_4490 0.79 -1.1
5,352,935 + -0.5
5,352,944 - +1.1
5,353,111 + Psyr_4491 0.17 -0.9
5,353,111 + Psyr_4491 0.17 +0.1
5,353,112 - Psyr_4491 0.17 +0.1

Or see this region's nucleotide sequence