Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4487

Experiment: Green bean; epiphytic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Green bean; epiphytic
5,347,783	+		Psyr_4486	0.36	-0.5
5,347,784	-		Psyr_4486	0.37	-1.7
5,347,808	+		Psyr_4486	0.40	+2.1
5,347,808	+		Psyr_4486	0.40	+0.1
5,347,808	+		Psyr_4486	0.40	+0.5
5,347,809	-		Psyr_4486	0.41	-2.1
5,347,809	-		Psyr_4486	0.41	-1.3
5,347,811	+		Psyr_4486	0.41	+2.0
5,347,811	+		Psyr_4486	0.41	+0.5
5,347,811	+		Psyr_4486	0.41	-0.1
5,347,811	+		Psyr_4486	0.41	+1.1
5,347,812	-		Psyr_4486	0.41	-0.2
5,347,812	-		Psyr_4486	0.41	+0.4
5,347,872	-		Psyr_4486	0.50	-0.2
5,347,873	+		Psyr_4486	0.51	+0.8
5,347,873	+		Psyr_4486	0.51	+0.5
5,347,873	+		Psyr_4486	0.51	+0.5
5,347,873	+		Psyr_4486	0.51	-0.2
5,347,873	+		Psyr_4486	0.51	-2.4
5,347,873	+		Psyr_4486	0.51	+0.5
5,347,873	+		Psyr_4486	0.51	+1.1
5,347,873	+		Psyr_4486	0.51	+0.8
5,347,873	+		Psyr_4486	0.51	+0.5
5,347,873	+		Psyr_4486	0.51	-1.7
5,347,873	+		Psyr_4486	0.51	-0.9
5,347,873	+		Psyr_4486	0.51	+1.0
5,347,873	+		Psyr_4486	0.51	+0.9
5,347,873	+		Psyr_4486	0.51	-0.4
5,347,873	+		Psyr_4486	0.51	-0.3
5,347,874	-		Psyr_4486	0.51	+0.4
5,347,874	-		Psyr_4486	0.51	+1.5
5,347,874	-		Psyr_4486	0.51	+0.8
5,347,874	-		Psyr_4486	0.51	+0.5
5,347,874	-		Psyr_4486	0.51	+1.3
5,347,874	-		Psyr_4486	0.51	+0.4
5,347,874	-		Psyr_4486	0.51	+0.2
5,347,874	-		Psyr_4486	0.51	+0.9
5,347,874	-		Psyr_4486	0.51	+0.9
5,347,874	-		Psyr_4486	0.51	+1.2
5,347,874	-		Psyr_4486	0.51	-0.4
5,347,874	-		Psyr_4486	0.51	-0.0
5,347,874	-		Psyr_4486	0.51	+0.1
5,347,874	-		Psyr_4486	0.51	+0.3
5,347,874	-		Psyr_4486	0.51	-0.2
5,347,895	-		Psyr_4486	0.54	-0.9
5,347,895	-		Psyr_4486	0.54	+0.5
5,348,001	+		Psyr_4486	0.71	+1.7
5,348,002	-		Psyr_4486	0.71	-0.1
5,348,007	+		Psyr_4486	0.72	+0.5
5,348,007	+		Psyr_4486	0.72	+0.7
5,348,008	-		Psyr_4486	0.72	+0.5
5,348,078	-		Psyr_4486	0.83	+0.1
5,348,109	+		Psyr_4486	0.88	+1.1
5,348,123	+				+0.8
5,348,207	-				-0.2
5,348,281	+				+0.0
5,348,311	-				-0.5
5,348,317	+				-0.3
5,348,465	+				-0.6
5,348,465	+				+0.1
5,348,466	-				-0.5
5,348,477	+				-0.5
5,348,477	+				+1.4
5,348,477	+				+1.8
5,348,477	+				-0.2
5,348,477	+				-0.1
5,348,478	-				+0.6
5,348,478	-				+0.9
5,348,478	-				+1.0
5,348,478	-				+0.8
5,348,478	-				+0.1
5,348,478	-				+0.0
5,348,478	-				-0.0
5,348,481	+				+0.3
5,348,481	+				-1.2
5,348,481	+				-0.9
5,348,482	-				-0.4
5,348,482	-				+1.5
5,348,482	-				+0.7
5,348,482	-				+0.4
5,348,759	+				+0.4
5,348,759	+				-1.2
5,348,759	+				+1.2
5,348,759	+				-0.2
5,348,759	+				-1.2
5,348,759	+				-0.5
5,348,759	+				-0.3
5,348,759	+				-0.5
5,348,759	+				+0.4
5,348,759	+				+1.4
5,348,760	-				+0.6
5,348,760	-				+0.1
5,348,760	-				+0.1
5,348,760	-				-0.0
5,348,760	-				-1.2
5,348,812	+				-0.8
5,348,812	+				+0.2
5,348,812	+				+0.2
5,348,812	+				+0.8
5,348,812	+				-1.9
5,348,812	+				-0.2
5,348,812	+				+0.5
5,348,813	-				-0.9
5,348,813	-				+0.1
5,348,813	-				+1.3
5,348,813	-				+0.1
5,348,813	-				+3.1
5,348,813	-				-0.2
5,348,813	-				+0.5
5,348,813	-				+0.0
5,349,202	+		Psyr_4487	0.47	+0.4
5,349,448	+		Psyr_4487	0.74	-0.3
5,349,448	+		Psyr_4487	0.74	+0.1
5,349,448	+		Psyr_4487	0.74	+0.7
5,349,448	+		Psyr_4487	0.74	-1.4
5,349,448	+		Psyr_4487	0.74	+1.7
5,349,448	+		Psyr_4487	0.74	+0.1
5,349,448	+		Psyr_4487	0.74	-0.4
5,349,448	+		Psyr_4487	0.74	+1.4
5,349,449	-		Psyr_4487	0.74	-1.1
5,349,449	-		Psyr_4487	0.74	-0.4
5,349,449	-		Psyr_4487	0.74	+0.1
5,349,449	-		Psyr_4487	0.74	-0.2
5,349,568	-		Psyr_4487	0.87	-0.3
5,349,598	+				+0.4
5,349,599	-				+1.3
5,349,641	-				-0.1
5,349,718	+				+0.6
5,349,718	+				-0.6
5,349,718	+				+1.9
5,349,718	+				-0.9
5,349,719	-				+0.3
5,349,725	+				-0.3
5,349,726	-				+1.5
5,349,726	-				+0.9
5,349,759	+				+0.9
5,349,759	+				-0.9
5,349,760	-				+0.6
5,349,805	+				-1.1
5,349,806	-				-1.9
5,349,806	-				-0.1
5,349,806	-				-0.1
5,349,806	-				+0.1
5,349,806	-				+0.1
5,349,806	-				+0.9
5,349,806	-				-0.9
5,349,806	-				+0.6
5,349,806	-				-0.6
5,349,924	+		Psyr_4488	0.15	+1.7
5,349,924	+		Psyr_4488	0.15	-0.2
5,349,924	+		Psyr_4488	0.15	+0.8
5,349,924	+		Psyr_4488	0.15	+0.3
5,349,925	-		Psyr_4488	0.15	+1.7
5,349,925	-		Psyr_4488	0.15	+1.1
5,349,973	-		Psyr_4488	0.19	+0.6
5,349,973	-		Psyr_4488	0.19	+1.7
5,349,983	+		Psyr_4488	0.20	+1.1
5,350,005	+		Psyr_4488	0.21	-0.3
5,350,005	+		Psyr_4488	0.21	+0.4
5,350,005	+		Psyr_4488	0.21	-0.1
5,350,006	-		Psyr_4488	0.21	+1.8
5,350,006	-		Psyr_4488	0.21	-2.3
5,350,006	-		Psyr_4488	0.21	-0.7
5,350,006	-		Psyr_4488	0.21	-1.7
5,350,054	-		Psyr_4488	0.25	+0.2
5,350,125	+		Psyr_4488	0.30	+0.1
5,350,125	+		Psyr_4488	0.30	-1.1
5,350,126	-		Psyr_4488	0.30	+0.1
5,350,126	-		Psyr_4488	0.30	+0.1
5,350,215	+		Psyr_4488	0.37	-0.9
5,350,215	+		Psyr_4488	0.37	+1.1
5,350,215	+		Psyr_4488	0.37	-0.1
5,350,215	+		Psyr_4488	0.37	+0.3
5,350,215	+		Psyr_4488	0.37	+1.4
5,350,216	-		Psyr_4488	0.37	-0.9
5,350,216	-		Psyr_4488	0.37	+1.1
5,350,216	-		Psyr_4488	0.37	-0.7
5,350,354	+		Psyr_4488	0.48	-1.3
5,350,360	+		Psyr_4488	0.48	+0.9
5,350,360	+		Psyr_4488	0.48	+1.7
5,350,360	+		Psyr_4488	0.48	+0.0
5,350,360	+		Psyr_4488	0.48	+0.8
5,350,360	+		Psyr_4488	0.48	-0.2
5,350,360	+		Psyr_4488	0.48	-0.5
5,350,361	-		Psyr_4488	0.48	-0.9
5,350,361	-		Psyr_4488	0.48	-0.9
5,350,361	-		Psyr_4488	0.48	+0.2
5,350,361	-		Psyr_4488	0.48	-0.9
5,350,510	-		Psyr_4488	0.59	-0.1
5,350,544	+		Psyr_4488	0.62	+0.7
5,350,621	-		Psyr_4488	0.68	-0.4
5,350,621	-		Psyr_4488	0.68	-1.2
5,350,689	+		Psyr_4488	0.73	-1.9
5,350,689	+		Psyr_4488	0.73	+1.0
5,350,690	-		Psyr_4488	0.73	+1.1