Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4096

Experiment: Green bean; epiphytic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4094 and Psyr_4095 are separated by 275 nucleotidesPsyr_4095 and Psyr_4096 are separated by 116 nucleotidesPsyr_4096 and Psyr_4097 are separated by 112 nucleotides Psyr_4094: Psyr_4094 - protein translocase subunit secA, at 4,880,445 to 4,883,186 _4094 Psyr_4095: Psyr_4095 - conserved hypothetical protein, at 4,883,462 to 4,883,947 _4095 Psyr_4096: Psyr_4096 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 4,884,064 to 4,884,975 _4096 Psyr_4097: Psyr_4097 - cell division protein FtsZ, at 4,885,088 to 4,886,275 _4097 Position (kb) 4884 4885Strain fitness (log2 ratio) -2 -1 0 1at 4883.209 kb on - strandat 4883.209 kb on - strandat 4883.209 kb on - strandat 4883.346 kb on - strandat 4883.346 kb on - strandat 4883.945 kb on + strandat 4883.945 kb on + strandat 4883.946 kb on - strandat 4883.996 kb on + strandat 4884.065 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
remove
4,883,209 - -0.8
4,883,209 - -0.7
4,883,209 - +0.8
4,883,346 - -2.7
4,883,346 - +1.5
4,883,945 + -1.1
4,883,945 + -0.6
4,883,946 - +0.0
4,883,996 + +0.2
4,884,065 + -0.3

Or see this region's nucleotide sequence