Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3864

Experiment: Green bean; epiphytic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Green bean; epiphytic
4,602,337	+		Psyr_3863	0.23	+0.8
4,602,347	-		Psyr_3863	0.26	+2.0
4,602,347	-		Psyr_3863	0.26	+1.5
4,602,347	-		Psyr_3863	0.26	+1.5
4,602,347	-		Psyr_3863	0.26	+2.0
4,602,347	-		Psyr_3863	0.26	+0.1
4,602,347	-		Psyr_3863	0.26	+1.0
4,602,367	+		Psyr_3863	0.30	-0.0
4,602,368	-		Psyr_3863	0.30	+0.9
4,602,381	+		Psyr_3863	0.33	+0.8
4,602,382	-		Psyr_3863	0.33	-0.6
4,602,382	-		Psyr_3863	0.33	+0.4
4,602,465	-		Psyr_3863	0.50	+0.2
4,602,465	-		Psyr_3863	0.50	-0.6
4,602,688	+				-0.2
4,602,743	-				+1.0
4,602,975	-				+0.3
4,603,155	+				-1.0
4,603,155	+				+0.6
4,603,155	+				-0.1
4,603,155	+				-0.0
4,603,155	+				-1.3
4,603,155	+				+0.9
4,603,155	+				-1.3
4,603,155	+				-1.3
4,603,155	+				+0.1
4,603,155	+				+0.1
4,603,316	-				+1.6
4,603,316	-				-1.4
4,603,363	+				-1.3
4,603,363	+				+0.5
4,603,513	+				-0.1
4,603,513	+				-2.0
4,603,513	+				+1.2
4,603,513	+				-1.0
4,603,514	-				+0.6
4,603,514	-				+0.5
4,603,528	+				+0.1
4,603,528	+				+0.3
4,603,529	-				+1.1
4,603,560	+		Psyr_3864	0.10	+1.6
4,603,577	-		Psyr_3864	0.11	-0.3
4,603,585	+		Psyr_3864	0.11	-0.5
4,603,585	+		Psyr_3864	0.11	+0.5
4,603,677	-		Psyr_3864	0.15	+1.3
4,603,677	-		Psyr_3864	0.15	+0.4
4,603,765	+		Psyr_3864	0.19	-0.3
4,603,765	+		Psyr_3864	0.19	-0.6
4,603,765	+		Psyr_3864	0.19	+0.8
4,603,765	+		Psyr_3864	0.19	+2.1
4,603,765	+		Psyr_3864	0.19	-0.3
4,603,766	-		Psyr_3864	0.19	+0.4
4,603,766	-		Psyr_3864	0.19	+0.1
4,603,766	-		Psyr_3864	0.19	+1.0
4,603,766	-		Psyr_3864	0.19	+0.3
4,603,766	-		Psyr_3864	0.19	-0.2
4,603,766	-		Psyr_3864	0.19	+0.4
4,603,766	-		Psyr_3864	0.19	+0.1
4,603,766	-		Psyr_3864	0.19	+0.6
4,603,766	-		Psyr_3864	0.19	-0.5
4,603,766	-		Psyr_3864	0.19	+0.2
4,603,865	-		Psyr_3864	0.23	+0.4
4,603,865	-		Psyr_3864	0.23	+0.5
4,603,865	-		Psyr_3864	0.23	-1.7
4,603,947	+		Psyr_3864	0.26	-0.8
4,603,947	+		Psyr_3864	0.26	+0.2
4,603,947	+		Psyr_3864	0.26	+1.9
4,603,947	+		Psyr_3864	0.26	+0.7
4,603,947	+		Psyr_3864	0.26	-0.2
4,603,947	+		Psyr_3864	0.26	+0.3
4,603,947	+		Psyr_3864	0.26	-3.4
4,603,947	+		Psyr_3864	0.26	-1.0
4,603,947	+		Psyr_3864	0.26	-0.1
4,603,947	+		Psyr_3864	0.26	+0.3
4,603,947	+		Psyr_3864	0.26	+0.9
4,603,947	+		Psyr_3864	0.26	+0.5
4,603,947	+		Psyr_3864	0.26	-0.7
4,603,947	+		Psyr_3864	0.26	-0.8
4,603,947	+		Psyr_3864	0.26	+0.2
4,603,947	+		Psyr_3864	0.26	-0.2
4,603,947	+		Psyr_3864	0.26	+0.3
4,603,947	+		Psyr_3864	0.26	-0.4
4,603,947	+		Psyr_3864	0.26	+1.5
4,603,947	+		Psyr_3864	0.26	+0.8
4,603,947	+		Psyr_3864	0.26	-0.0
4,603,947	+		Psyr_3864	0.26	+0.7
4,603,948	-		Psyr_3864	0.26	-0.7
4,603,948	-		Psyr_3864	0.26	-0.5
4,603,948	-		Psyr_3864	0.26	-0.2
4,603,948	-		Psyr_3864	0.26	+0.3
4,603,948	-		Psyr_3864	0.26	+0.1
4,603,948	-		Psyr_3864	0.26	+0.1
4,603,948	-		Psyr_3864	0.26	+0.8
4,603,948	-		Psyr_3864	0.26	+0.3
4,603,948	-		Psyr_3864	0.26	-0.5
4,603,948	-		Psyr_3864	0.26	+1.6
4,603,948	-		Psyr_3864	0.26	+0.3
4,603,948	-		Psyr_3864	0.26	-0.3
4,603,948	-		Psyr_3864	0.26	-0.4
4,603,948	-		Psyr_3864	0.26	+0.2
4,603,948	-		Psyr_3864	0.26	+0.9
4,603,948	-		Psyr_3864	0.26	-0.0
4,603,948	-		Psyr_3864	0.26	-1.6
4,603,948	-		Psyr_3864	0.26	-1.0
4,603,948	-		Psyr_3864	0.26	-0.4
4,603,948	-		Psyr_3864	0.26	+0.2
4,603,948	-		Psyr_3864	0.26	+0.8
4,603,949	+		Psyr_3864	0.26	+0.1
4,603,949	+		Psyr_3864	0.26	-0.0
4,603,950	-		Psyr_3864	0.26	+2.0
4,603,951	+		Psyr_3864	0.26	-1.5
4,603,951	+		Psyr_3864	0.26	+0.4
4,603,951	+		Psyr_3864	0.26	+0.7
4,603,951	+		Psyr_3864	0.26	+1.0
4,603,951	+		Psyr_3864	0.26	+1.0
4,603,951	+		Psyr_3864	0.26	-1.1
4,603,951	+		Psyr_3864	0.26	-1.1
4,603,951	+		Psyr_3864	0.26	-1.1
4,603,951	+		Psyr_3864	0.26	+0.4
4,603,951	+		Psyr_3864	0.26	+1.4
4,603,952	-		Psyr_3864	0.26	-1.6
4,603,952	-		Psyr_3864	0.26	-0.8
4,603,952	-		Psyr_3864	0.26	-0.5
4,603,952	-		Psyr_3864	0.26	-0.6
4,603,952	-		Psyr_3864	0.26	-0.0
4,603,952	-		Psyr_3864	0.26	-1.3
4,603,952	-		Psyr_3864	0.26	-0.1
4,603,952	-		Psyr_3864	0.26	-1.0
4,603,952	-		Psyr_3864	0.26	+0.8
4,603,952	-		Psyr_3864	0.26	+0.9
4,603,952	-		Psyr_3864	0.26	+2.0
4,603,960	+		Psyr_3864	0.27	+0.1
4,603,985	+		Psyr_3864	0.28	-0.6
4,603,986	-		Psyr_3864	0.28	-0.1
4,603,987	+		Psyr_3864	0.28	-0.1
4,603,988	-		Psyr_3864	0.28	+0.6
4,604,026	+		Psyr_3864	0.29	+0.5
4,604,026	+		Psyr_3864	0.29	-1.0
4,604,026	+		Psyr_3864	0.29	+0.4
4,604,026	+		Psyr_3864	0.29	-0.5
4,604,026	+		Psyr_3864	0.29	+0.4
4,604,026	+		Psyr_3864	0.29	+0.2
4,604,026	+		Psyr_3864	0.29	+0.2
4,604,027	-		Psyr_3864	0.29	-0.0
4,604,027	-		Psyr_3864	0.29	+0.2
4,604,027	-		Psyr_3864	0.29	+0.6
4,604,065	+		Psyr_3864	0.31	-0.6
4,604,083	+		Psyr_3864	0.32	-0.9
4,604,083	+		Psyr_3864	0.32	-1.6
4,604,084	-		Psyr_3864	0.32	+0.4
4,604,142	-		Psyr_3864	0.34	-2.4
4,604,216	-		Psyr_3864	0.37	+1.0
4,604,216	-		Psyr_3864	0.37	-0.3
4,604,275	+		Psyr_3864	0.39	+0.4
4,604,275	+		Psyr_3864	0.39	+0.3
4,604,275	+		Psyr_3864	0.39	+1.0
4,604,275	+		Psyr_3864	0.39	+1.5
4,604,275	+		Psyr_3864	0.39	+0.5
4,604,276	-		Psyr_3864	0.39	-0.4
4,604,276	-		Psyr_3864	0.39	-0.2
4,604,276	-		Psyr_3864	0.39	+0.7
4,604,276	-		Psyr_3864	0.39	-0.0
4,604,320	+		Psyr_3864	0.41	-1.3
4,604,339	+		Psyr_3864	0.42	+1.5
4,604,449	+		Psyr_3864	0.47	-0.3
4,604,449	+		Psyr_3864	0.47	-0.2
4,604,450	-		Psyr_3864	0.47	+0.9
4,604,450	-		Psyr_3864	0.47	-0.6
4,604,450	-		Psyr_3864	0.47	-0.9
4,604,480	-		Psyr_3864	0.48	+0.4
4,604,497	+		Psyr_3864	0.49	+0.7
4,604,498	-		Psyr_3864	0.49	+0.6
4,604,498	-		Psyr_3864	0.49	-0.6
4,604,498	-		Psyr_3864	0.49	-0.0
4,604,498	-		Psyr_3864	0.49	-1.1
4,604,498	-		Psyr_3864	0.49	+1.0
4,604,498	-		Psyr_3864	0.49	+0.6
4,604,515	+		Psyr_3864	0.49	-1.5
4,604,515	+		Psyr_3864	0.49	+0.7
4,604,516	-		Psyr_3864	0.49	-0.2
4,604,599	+		Psyr_3864	0.53	-1.3
4,604,626	+		Psyr_3864	0.54	+1.5
4,604,627	-		Psyr_3864	0.54	+0.2
4,604,627	-		Psyr_3864	0.54	+0.6
4,604,627	-		Psyr_3864	0.54	+1.0
4,604,683	+		Psyr_3864	0.56	+0.0
4,604,683	+		Psyr_3864	0.56	+0.2
4,604,684	-		Psyr_3864	0.56	-0.0
4,604,690	-		Psyr_3864	0.56	+0.1
4,604,902	+		Psyr_3864	0.65	+0.8
4,604,903	-		Psyr_3864	0.65	+0.3
4,604,903	-		Psyr_3864	0.65	-0.6
4,604,905	+		Psyr_3864	0.65	-0.0
4,604,906	-		Psyr_3864	0.65	-0.2
4,604,906	-		Psyr_3864	0.65	+0.8
4,604,944	+		Psyr_3864	0.67	-0.4
4,604,945	-		Psyr_3864	0.67	-0.5
4,604,953	+		Psyr_3864	0.67	+1.0
4,604,954	-		Psyr_3864	0.67	-0.3
4,604,974	+		Psyr_3864	0.68	+0.5
4,604,974	+		Psyr_3864	0.68	-0.3
4,604,974	+		Psyr_3864	0.68	-1.3
4,604,974	+		Psyr_3864	0.68	+1.0
4,604,975	-		Psyr_3864	0.68	+0.2
4,604,975	-		Psyr_3864	0.68	-0.7
4,604,975	-		Psyr_3864	0.68	-2.3
4,604,975	-		Psyr_3864	0.68	-0.3
4,604,975	-		Psyr_3864	0.68	-0.1
4,604,975	-		Psyr_3864	0.68	-0.5
4,605,008	-		Psyr_3864	0.70	-0.4
4,605,008	-		Psyr_3864	0.70	+0.7
4,605,061	+		Psyr_3864	0.72	-0.3
4,605,061	+		Psyr_3864	0.72	-1.1
4,605,061	+		Psyr_3864	0.72	-0.0
4,605,061	+		Psyr_3864	0.72	-0.0
4,605,061	+		Psyr_3864	0.72	+0.7
4,605,061	+		Psyr_3864	0.72	-1.5
4,605,061	+		Psyr_3864	0.72	+0.8
4,605,062	-		Psyr_3864	0.72	+0.8
4,605,062	-		Psyr_3864	0.72	-1.0
4,605,062	-		Psyr_3864	0.72	+0.6
4,605,062	-		Psyr_3864	0.72	+0.6
4,605,101	+		Psyr_3864	0.73	+0.6
4,605,181	+		Psyr_3864	0.77	+1.7
4,605,181	+		Psyr_3864	0.77	-0.9
4,605,182	-		Psyr_3864	0.77	-0.2
4,605,182	-		Psyr_3864	0.77	-0.4
4,605,182	-		Psyr_3864	0.77	-0.4
4,605,274	+		Psyr_3864	0.80	-1.4
4,605,274	+		Psyr_3864	0.80	+1.3
4,605,433	+		Psyr_3864	0.87	+0.6
4,605,434	-		Psyr_3864	0.87	+1.3
4,605,434	-		Psyr_3864	0.87	-2.3
4,605,434	-		Psyr_3864	0.87	+0.7
4,605,434	-		Psyr_3864	0.87	+0.8
4,605,602	+				-0.5
4,605,632	-				+0.1
4,605,770	-				+0.9
4,605,770	-				+0.6
4,605,770	-				+0.2
4,605,770	-				+0.2
4,606,037	-		Psyr_3865	0.32	+0.6
4,606,072	+		Psyr_3865	0.38	-0.0
4,606,072	+		Psyr_3865	0.38	-1.3
4,606,072	+		Psyr_3865	0.38	-0.1
4,606,072	+		Psyr_3865	0.38	+0.4
4,606,073	-		Psyr_3865	0.38	-0.1
4,606,073	-		Psyr_3865	0.38	-1.8
4,606,073	-		Psyr_3865	0.38	+1.0
4,606,073	-		Psyr_3865	0.38	-0.4
4,606,073	-		Psyr_3865	0.38	+0.3
4,606,238	-		Psyr_3865	0.68	-1.0
4,606,238	-		Psyr_3865	0.68	-0.6
4,606,351	-		Psyr_3865	0.89	+0.2
4,606,351	-		Psyr_3865	0.89	-0.0
4,606,429	-				-0.6
4,606,440	+				-2.0
4,606,446	+				-0.7
4,606,447	-				+3.0
4,606,447	-				-0.5
4,606,502	-				+2.8
4,606,550	+				-0.3
4,606,550	+				-1.3
4,606,550	+				+1.2
4,606,551	-				+1.3
4,606,551	-				+0.5
4,606,551	-				+1.3
4,606,551	-				+0.3
4,606,561	+				+0.2
4,606,562	-				-0.6
4,606,695	+		Psyr_3866	0.34	-0.6
4,606,695	+		Psyr_3866	0.34	-0.1
4,606,696	-		Psyr_3866	0.34	+1.2
4,606,696	-		Psyr_3866	0.34	+2.2