Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3201

Experiment: Green bean; epiphytic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3199 and Psyr_3200 are separated by 2 nucleotidesPsyr_3200 and Psyr_3201 overlap by 4 nucleotidesPsyr_3201 and Psyr_3202 are separated by 136 nucleotides Psyr_3199: Psyr_3199 - NADH dehydrogenase subunit D / NADH dehydrogenase subunit C, at 3,828,879 to 3,830,660 _3199 Psyr_3200: Psyr_3200 - NADH dehydrogenase subunit E, at 3,830,663 to 3,831,160 _3200 Psyr_3201: Psyr_3201 - NADH dehydrogenase subunit F, at 3,831,157 to 3,832,515 _3201 Psyr_3202: Psyr_3202 - NADH dehydrogenase subunit G, at 3,832,652 to 3,835,369 _3202 Position (kb) 3831 3832 3833Strain fitness (log2 ratio) -2 -1 0 1at 3830.496 kb on + strandat 3830.527 kb on - strandat 3830.886 kb on - strand, within Psyr_3200at 3831.157 kb on - strandat 3831.886 kb on + strand, within Psyr_3201at 3832.114 kb on + strand, within Psyr_3201at 3832.115 kb on - strand, within Psyr_3201at 3832.592 kb on + strandat 3832.661 kb on - strandat 3833.135 kb on - strand, within Psyr_3202

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
remove
3,830,496 + -1.3
3,830,527 - +0.1
3,830,886 - Psyr_3200 0.45 +0.7
3,831,157 - -2.1
3,831,886 + Psyr_3201 0.54 +0.3
3,832,114 + Psyr_3201 0.70 -0.1
3,832,115 - Psyr_3201 0.70 -0.9
3,832,592 + +1.0
3,832,661 - -1.1
3,833,135 - Psyr_3202 0.18 +0.4

Or see this region's nucleotide sequence