Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2243

Experiment: Green bean; epiphytic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2241 and Psyr_2242 are separated by 185 nucleotidesPsyr_2242 and Psyr_2243 are separated by 7 nucleotidesPsyr_2243 and Psyr_2244 are separated by 63 nucleotides Psyr_2241: Psyr_2241 - methyl-accepting chemotaxis sensory transducer, at 2,605,380 to 2,607,176 _2241 Psyr_2242: Psyr_2242 - conserved hypothetical protein, at 2,607,362 to 2,607,667 _2242 Psyr_2243: Psyr_2243 - Endoribonuclease L-PSP, at 2,607,675 to 2,608,076 _2243 Psyr_2244: Psyr_2244 - DNA topoisomerase III, at 2,608,140 to 2,610,110 _2244 Position (kb) 2607 2608 2609Strain fitness (log2 ratio) -2 -1 0 1 2at 2606.769 kb on + strand, within Psyr_2241at 2606.769 kb on + strand, within Psyr_2241at 2606.770 kb on - strand, within Psyr_2241at 2606.803 kb on - strand, within Psyr_2241at 2606.913 kb on + strand, within Psyr_2241at 2606.913 kb on + strand, within Psyr_2241at 2607.060 kb on + strandat 2607.061 kb on - strandat 2607.061 kb on - strandat 2607.061 kb on - strandat 2607.174 kb on + strandat 2607.223 kb on - strandat 2607.246 kb on + strandat 2607.306 kb on + strandat 2607.306 kb on + strandat 2607.390 kb on + strandat 2607.390 kb on + strandat 2607.390 kb on + strandat 2607.390 kb on + strandat 2607.391 kb on - strandat 2607.391 kb on - strandat 2607.443 kb on + strand, within Psyr_2242at 2607.443 kb on + strand, within Psyr_2242at 2607.444 kb on - strand, within Psyr_2242at 2607.444 kb on - strand, within Psyr_2242at 2607.838 kb on + strand, within Psyr_2243at 2607.838 kb on + strand, within Psyr_2243at 2607.838 kb on + strand, within Psyr_2243at 2607.838 kb on + strand, within Psyr_2243at 2607.838 kb on + strand, within Psyr_2243at 2607.838 kb on + strand, within Psyr_2243at 2607.838 kb on + strand, within Psyr_2243at 2607.839 kb on - strand, within Psyr_2243at 2607.960 kb on - strand, within Psyr_2243at 2607.960 kb on - strand, within Psyr_2243at 2607.982 kb on + strand, within Psyr_2243at 2607.983 kb on - strand, within Psyr_2243at 2608.082 kb on - strandat 2608.082 kb on - strandat 2608.289 kb on + strandat 2608.289 kb on + strandat 2608.290 kb on - strandat 2608.290 kb on - strandat 2608.874 kb on - strand, within Psyr_2244at 2608.924 kb on + strand, within Psyr_2244at 2608.925 kb on - strand, within Psyr_2244at 2608.925 kb on - strand, within Psyr_2244at 2608.925 kb on - strand, within Psyr_2244at 2608.957 kb on - strand, within Psyr_2244

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Per-strain Table

Position Strand Gene LocusTag Fraction Green bean; epiphytic
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2,606,769 + Psyr_2241 0.77 -0.9
2,606,769 + Psyr_2241 0.77 +0.3
2,606,770 - Psyr_2241 0.77 -1.9
2,606,803 - Psyr_2241 0.79 -0.3
2,606,913 + Psyr_2241 0.85 -1.8
2,606,913 + Psyr_2241 0.85 -0.9
2,607,060 + -1.2
2,607,061 - -0.5
2,607,061 - -1.6
2,607,061 - +0.3
2,607,174 + +0.9
2,607,223 - +0.3
2,607,246 + +0.0
2,607,306 + -0.3
2,607,306 + +0.7
2,607,390 + -0.2
2,607,390 + +0.7
2,607,390 + +0.4
2,607,390 + +0.4
2,607,391 - +0.2
2,607,391 - -1.0
2,607,443 + Psyr_2242 0.26 +0.7
2,607,443 + Psyr_2242 0.26 +1.3
2,607,444 - Psyr_2242 0.27 +0.6
2,607,444 - Psyr_2242 0.27 -0.9
2,607,838 + Psyr_2243 0.41 -0.4
2,607,838 + Psyr_2243 0.41 +0.7
2,607,838 + Psyr_2243 0.41 +0.7
2,607,838 + Psyr_2243 0.41 -2.1
2,607,838 + Psyr_2243 0.41 -0.8
2,607,838 + Psyr_2243 0.41 -0.8
2,607,838 + Psyr_2243 0.41 +0.1
2,607,839 - Psyr_2243 0.41 +1.6
2,607,960 - Psyr_2243 0.71 -0.2
2,607,960 - Psyr_2243 0.71 +0.2
2,607,982 + Psyr_2243 0.76 +1.0
2,607,983 - Psyr_2243 0.77 -1.3
2,608,082 - -1.6
2,608,082 - +2.2
2,608,289 + +1.9
2,608,289 + +1.3
2,608,290 - -1.0
2,608,290 - -0.7
2,608,874 - Psyr_2244 0.37 +0.4
2,608,924 + Psyr_2244 0.40 -0.7
2,608,925 - Psyr_2244 0.40 +1.9
2,608,925 - Psyr_2244 0.40 -1.5
2,608,925 - Psyr_2244 0.40 +0.0
2,608,957 - Psyr_2244 0.41 -0.0

Or see this region's nucleotide sequence