Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24925 and IAI46_24930 are separated by 23 nucleotides IAI46_24930 and IAI46_24935 overlap by 4 nucleotides IAI46_24935 and IAI46_24940 are separated by 49 nucleotides IAI46_24940 and IAI46_24945 are separated by 163 nucleotides
IAI46_24925: IAI46_24925 - fatty acid biosynthesis protein FabY, at 5,319,162 to 5,320,109
_24925
IAI46_24930: IAI46_24930 - D-tyrosyl-tRNA(Tyr) deacylase, at 5,320,133 to 5,320,570
_24930
IAI46_24935: IAI46_24935 - virulence factor BrkB family protein, at 5,320,567 to 5,321,457
_24935
IAI46_24940: IAI46_24940 - glucose-1-phosphatase, at 5,321,507 to 5,322,097
_24940
IAI46_24945: IAI46_24945 - ribosome-dependent GTPase TypA, at 5,322,261 to 5,324,084
_24945
Position (kb) 5320
5321
5322 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5319.613 kb on + strand, within IAI46_24925 at 5319.614 kb on - strand, within IAI46_24925 at 5319.740 kb on + strand, within IAI46_24925 at 5319.741 kb on - strand, within IAI46_24925 at 5319.789 kb on - strand, within IAI46_24925 at 5319.795 kb on + strand, within IAI46_24925 at 5319.796 kb on - strand, within IAI46_24925 at 5319.796 kb on - strand, within IAI46_24925 at 5319.882 kb on + strand, within IAI46_24925 at 5319.926 kb on - strand, within IAI46_24925 at 5319.926 kb on - strand, within IAI46_24925 at 5319.926 kb on - strand, within IAI46_24925 at 5319.926 kb on - strand, within IAI46_24925 at 5319.926 kb on - strand, within IAI46_24925 at 5319.994 kb on + strand, within IAI46_24925 at 5319.994 kb on + strand, within IAI46_24925 at 5320.060 kb on + strand at 5320.061 kb on - strand at 5320.063 kb on + strand at 5320.063 kb on + strand at 5320.063 kb on + strand at 5320.064 kb on - strand at 5320.064 kb on - strand at 5320.093 kb on - strand at 5320.098 kb on + strand at 5320.098 kb on + strand at 5320.105 kb on + strand at 5320.105 kb on + strand at 5320.105 kb on + strand at 5320.106 kb on - strand at 5320.106 kb on - strand at 5320.106 kb on - strand at 5320.109 kb on + strand at 5320.109 kb on + strand at 5320.109 kb on + strand at 5320.109 kb on + strand at 5320.109 kb on + strand at 5320.109 kb on + strand at 5320.109 kb on + strand at 5320.109 kb on + strand at 5320.109 kb on + strand at 5320.110 kb on - strand at 5320.110 kb on - strand at 5320.110 kb on - strand at 5320.110 kb on - strand at 5320.110 kb on - strand at 5320.110 kb on - strand at 5320.248 kb on + strand, within IAI46_24930 at 5320.254 kb on + strand, within IAI46_24930 at 5320.255 kb on - strand, within IAI46_24930 at 5320.255 kb on - strand, within IAI46_24930 at 5320.255 kb on - strand, within IAI46_24930 at 5320.255 kb on - strand, within IAI46_24930 at 5320.257 kb on - strand, within IAI46_24930 at 5320.481 kb on + strand, within IAI46_24930 at 5320.481 kb on + strand, within IAI46_24930 at 5320.488 kb on - strand, within IAI46_24930 at 5320.502 kb on + strand, within IAI46_24930 at 5320.502 kb on + strand, within IAI46_24930 at 5320.502 kb on + strand, within IAI46_24930 at 5320.502 kb on + strand, within IAI46_24930 at 5320.503 kb on - strand, within IAI46_24930 at 5320.503 kb on - strand, within IAI46_24930 at 5320.503 kb on - strand, within IAI46_24930 at 5320.503 kb on - strand, within IAI46_24930 at 5320.503 kb on - strand, within IAI46_24930 at 5320.503 kb on - strand, within IAI46_24930 at 5320.512 kb on - strand, within IAI46_24930 at 5320.544 kb on + strand at 5320.545 kb on - strand at 5320.545 kb on - strand at 5320.545 kb on - strand at 5320.545 kb on - strand at 5320.545 kb on - strand at 5320.547 kb on + strand at 5320.547 kb on + strand at 5320.560 kb on - strand at 5320.671 kb on + strand, within IAI46_24935 at 5320.671 kb on + strand, within IAI46_24935 at 5320.671 kb on + strand, within IAI46_24935 at 5320.699 kb on + strand, within IAI46_24935 at 5320.727 kb on + strand, within IAI46_24935 at 5320.739 kb on + strand, within IAI46_24935 at 5320.740 kb on - strand, within IAI46_24935 at 5320.760 kb on + strand, within IAI46_24935 at 5320.760 kb on + strand, within IAI46_24935 at 5320.760 kb on + strand, within IAI46_24935 at 5320.760 kb on + strand, within IAI46_24935 at 5320.760 kb on + strand, within IAI46_24935 at 5320.761 kb on - strand, within IAI46_24935 at 5320.843 kb on - strand, within IAI46_24935 at 5320.862 kb on + strand, within IAI46_24935 at 5320.862 kb on + strand, within IAI46_24935 at 5320.862 kb on + strand, within IAI46_24935 at 5320.956 kb on + strand, within IAI46_24935 at 5320.956 kb on + strand, within IAI46_24935 at 5320.956 kb on + strand, within IAI46_24935 at 5320.970 kb on + strand, within IAI46_24935 at 5320.987 kb on - strand, within IAI46_24935 at 5321.030 kb on + strand, within IAI46_24935 at 5321.053 kb on - strand, within IAI46_24935 at 5321.053 kb on - strand, within IAI46_24935 at 5321.129 kb on - strand, within IAI46_24935 at 5321.235 kb on + strand, within IAI46_24935 at 5321.235 kb on + strand, within IAI46_24935 at 5321.236 kb on - strand, within IAI46_24935 at 5321.314 kb on + strand, within IAI46_24935 at 5321.332 kb on + strand, within IAI46_24935 at 5321.332 kb on + strand, within IAI46_24935 at 5321.332 kb on + strand, within IAI46_24935 at 5321.332 kb on + strand, within IAI46_24935 at 5321.333 kb on - strand, within IAI46_24935 at 5321.333 kb on - strand, within IAI46_24935 at 5321.336 kb on + strand, within IAI46_24935 at 5321.336 kb on + strand, within IAI46_24935 at 5321.336 kb on + strand, within IAI46_24935 at 5321.336 kb on + strand, within IAI46_24935 at 5321.336 kb on + strand, within IAI46_24935 at 5321.337 kb on - strand, within IAI46_24935 at 5321.337 kb on - strand, within IAI46_24935 at 5321.337 kb on - strand, within IAI46_24935 at 5321.337 kb on - strand, within IAI46_24935 at 5321.398 kb on + strand at 5321.481 kb on + strand at 5321.481 kb on + strand at 5321.482 kb on - strand at 5321.482 kb on - strand at 5321.482 kb on - strand at 5321.489 kb on - strand at 5321.489 kb on - strand at 5321.494 kb on + strand at 5321.495 kb on - strand at 5321.521 kb on - strand at 5321.531 kb on + strand at 5321.531 kb on + strand at 5321.532 kb on - strand at 5321.532 kb on - strand at 5321.532 kb on - strand at 5321.532 kb on - strand at 5321.532 kb on - strand at 5321.532 kb on - strand at 5321.632 kb on + strand, within IAI46_24940 at 5321.632 kb on + strand, within IAI46_24940 at 5321.632 kb on + strand, within IAI46_24940 at 5321.648 kb on + strand, within IAI46_24940 at 5321.649 kb on - strand, within IAI46_24940 at 5321.659 kb on - strand, within IAI46_24940 at 5321.659 kb on - strand, within IAI46_24940 at 5321.659 kb on - strand, within IAI46_24940 at 5321.677 kb on + strand, within IAI46_24940 at 5321.677 kb on + strand, within IAI46_24940 at 5321.678 kb on - strand, within IAI46_24940 at 5321.703 kb on + strand, within IAI46_24940 at 5321.704 kb on - strand, within IAI46_24940 at 5321.752 kb on - strand, within IAI46_24940 at 5321.980 kb on + strand, within IAI46_24940 at 5322.032 kb on + strand, within IAI46_24940 at 5322.032 kb on + strand, within IAI46_24940 at 5322.032 kb on + strand, within IAI46_24940 at 5322.032 kb on + strand, within IAI46_24940 at 5322.033 kb on - strand, within IAI46_24940 at 5322.033 kb on - strand, within IAI46_24940 at 5322.033 kb on - strand, within IAI46_24940 at 5322.042 kb on - strand at 5322.077 kb on + strand at 5322.078 kb on - strand at 5322.088 kb on + strand at 5322.088 kb on + strand at 5322.090 kb on + strand at 5322.090 kb on + strand at 5322.090 kb on + strand at 5322.090 kb on + strand at 5322.091 kb on - strand at 5322.091 kb on - strand at 5322.091 kb on - strand at 5322.091 kb on - strand at 5322.091 kb on - strand at 5322.091 kb on - strand at 5322.097 kb on + strand at 5322.097 kb on + strand at 5322.097 kb on + strand at 5322.097 kb on + strand at 5322.097 kb on + strand at 5322.097 kb on + strand at 5322.097 kb on + strand at 5322.097 kb on + strand at 5322.098 kb on - strand at 5322.098 kb on - strand at 5322.098 kb on - strand at 5322.098 kb on - strand at 5322.098 kb on - strand at 5322.128 kb on - strand at 5322.155 kb on + strand at 5322.156 kb on - strand at 5322.156 kb on - strand at 5322.176 kb on + strand at 5322.176 kb on + strand at 5322.176 kb on + strand at 5322.177 kb on - strand at 5322.179 kb on - strand at 5322.236 kb on + strand at 5322.236 kb on + strand at 5322.237 kb on - strand at 5322.237 kb on - strand at 5322.237 kb on - strand at 5322.237 kb on - strand at 5322.251 kb on - strand at 5322.273 kb on - strand at 5322.273 kb on - strand at 5322.293 kb on + strand at 5322.294 kb on - strand at 5322.294 kb on - strand at 5322.294 kb on - strand at 5322.294 kb on - strand at 5322.320 kb on + strand at 5322.351 kb on + strand at 5322.352 kb on - strand at 5322.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 5,319,613 + IAI46_24925 0.48 +0.4 5,319,614 - IAI46_24925 0.48 +0.2 5,319,740 + IAI46_24925 0.61 +0.2 5,319,741 - IAI46_24925 0.61 -0.3 5,319,789 - IAI46_24925 0.66 +1.2 5,319,795 + IAI46_24925 0.67 +0.0 5,319,796 - IAI46_24925 0.67 +0.2 5,319,796 - IAI46_24925 0.67 +0.9 5,319,882 + IAI46_24925 0.76 +0.8 5,319,926 - IAI46_24925 0.81 -0.9 5,319,926 - IAI46_24925 0.81 -0.2 5,319,926 - IAI46_24925 0.81 +0.2 5,319,926 - IAI46_24925 0.81 -0.8 5,319,926 - IAI46_24925 0.81 +0.2 5,319,994 + IAI46_24925 0.88 +0.6 5,319,994 + IAI46_24925 0.88 +0.1 5,320,060 + -0.6 5,320,061 - +0.6 5,320,063 + -0.0 5,320,063 + -1.8 5,320,063 + +0.3 5,320,064 - -1.1 5,320,064 - +0.2 5,320,093 - +1.0 5,320,098 + +0.8 5,320,098 + +0.1 5,320,105 + -1.4 5,320,105 + +0.4 5,320,105 + -0.4 5,320,106 - +0.1 5,320,106 - -1.2 5,320,106 - -1.3 5,320,109 + -0.2 5,320,109 + -0.9 5,320,109 + +0.4 5,320,109 + +0.0 5,320,109 + +0.2 5,320,109 + +1.2 5,320,109 + +0.4 5,320,109 + -0.1 5,320,109 + +0.7 5,320,110 - +0.2 5,320,110 - -0.0 5,320,110 - -0.0 5,320,110 - +0.3 5,320,110 - -0.5 5,320,110 - -0.4 5,320,248 + IAI46_24930 0.26 +0.2 5,320,254 + IAI46_24930 0.28 +0.3 5,320,255 - IAI46_24930 0.28 +0.2 5,320,255 - IAI46_24930 0.28 -0.1 5,320,255 - IAI46_24930 0.28 -0.6 5,320,255 - IAI46_24930 0.28 -0.2 5,320,257 - IAI46_24930 0.28 +0.7 5,320,481 + IAI46_24930 0.79 +0.2 5,320,481 + IAI46_24930 0.79 +0.8 5,320,488 - IAI46_24930 0.81 +0.1 5,320,502 + IAI46_24930 0.84 +0.6 5,320,502 + IAI46_24930 0.84 -0.3 5,320,502 + IAI46_24930 0.84 -1.5 5,320,502 + IAI46_24930 0.84 -1.0 5,320,503 - IAI46_24930 0.84 -0.1 5,320,503 - IAI46_24930 0.84 +0.5 5,320,503 - IAI46_24930 0.84 -0.5 5,320,503 - IAI46_24930 0.84 -0.2 5,320,503 - IAI46_24930 0.84 +0.5 5,320,503 - IAI46_24930 0.84 +0.8 5,320,512 - IAI46_24930 0.87 -1.5 5,320,544 + -0.4 5,320,545 - +0.2 5,320,545 - -0.1 5,320,545 - +0.0 5,320,545 - +1.3 5,320,545 - +0.7 5,320,547 + -1.6 5,320,547 + +0.2 5,320,560 - +0.9 5,320,671 + IAI46_24935 0.12 +1.3 5,320,671 + IAI46_24935 0.12 +0.8 5,320,671 + IAI46_24935 0.12 -1.2 5,320,699 + IAI46_24935 0.15 +0.5 5,320,727 + IAI46_24935 0.18 -0.8 5,320,739 + IAI46_24935 0.19 -2.0 5,320,740 - IAI46_24935 0.19 +0.5 5,320,760 + IAI46_24935 0.22 +0.8 5,320,760 + IAI46_24935 0.22 -0.3 5,320,760 + IAI46_24935 0.22 -0.1 5,320,760 + IAI46_24935 0.22 +0.8 5,320,760 + IAI46_24935 0.22 +0.1 5,320,761 - IAI46_24935 0.22 +0.1 5,320,843 - IAI46_24935 0.31 -0.2 5,320,862 + IAI46_24935 0.33 +0.8 5,320,862 + IAI46_24935 0.33 -0.6 5,320,862 + IAI46_24935 0.33 -1.5 5,320,956 + IAI46_24935 0.44 -0.0 5,320,956 + IAI46_24935 0.44 +0.5 5,320,956 + IAI46_24935 0.44 -0.9 5,320,970 + IAI46_24935 0.45 +0.2 5,320,987 - IAI46_24935 0.47 +0.6 5,321,030 + IAI46_24935 0.52 +1.1 5,321,053 - IAI46_24935 0.55 -0.1 5,321,053 - IAI46_24935 0.55 +0.2 5,321,129 - IAI46_24935 0.63 +0.5 5,321,235 + IAI46_24935 0.75 +0.6 5,321,235 + IAI46_24935 0.75 +0.9 5,321,236 - IAI46_24935 0.75 +0.2 5,321,314 + IAI46_24935 0.84 +0.2 5,321,332 + IAI46_24935 0.86 -0.0 5,321,332 + IAI46_24935 0.86 +0.8 5,321,332 + IAI46_24935 0.86 +0.4 5,321,332 + IAI46_24935 0.86 +1.0 5,321,333 - IAI46_24935 0.86 -0.2 5,321,333 - IAI46_24935 0.86 +0.4 5,321,336 + IAI46_24935 0.86 -0.4 5,321,336 + IAI46_24935 0.86 +0.7 5,321,336 + IAI46_24935 0.86 +1.1 5,321,336 + IAI46_24935 0.86 +0.4 5,321,336 + IAI46_24935 0.86 -1.8 5,321,337 - IAI46_24935 0.86 +0.1 5,321,337 - IAI46_24935 0.86 -0.7 5,321,337 - IAI46_24935 0.86 -0.8 5,321,337 - IAI46_24935 0.86 +1.7 5,321,398 + +0.4 5,321,481 + +0.6 5,321,481 + -1.4 5,321,482 - -0.8 5,321,482 - +0.3 5,321,482 - -0.6 5,321,489 - +0.5 5,321,489 - +0.3 5,321,494 + +0.3 5,321,495 - -0.1 5,321,521 - +0.3 5,321,531 + -2.2 5,321,531 + -0.1 5,321,532 - -1.2 5,321,532 - +1.4 5,321,532 - +0.1 5,321,532 - +0.1 5,321,532 - +0.9 5,321,532 - -0.7 5,321,632 + IAI46_24940 0.21 -0.7 5,321,632 + IAI46_24940 0.21 +0.3 5,321,632 + IAI46_24940 0.21 +0.3 5,321,648 + IAI46_24940 0.24 +0.0 5,321,649 - IAI46_24940 0.24 +0.5 5,321,659 - IAI46_24940 0.26 -0.5 5,321,659 - IAI46_24940 0.26 -0.1 5,321,659 - IAI46_24940 0.26 -1.4 5,321,677 + IAI46_24940 0.29 +0.1 5,321,677 + IAI46_24940 0.29 -0.0 5,321,678 - IAI46_24940 0.29 +0.1 5,321,703 + IAI46_24940 0.33 -0.6 5,321,704 - IAI46_24940 0.33 -0.4 5,321,752 - IAI46_24940 0.41 -0.3 5,321,980 + IAI46_24940 0.80 -0.3 5,322,032 + IAI46_24940 0.89 +0.5 5,322,032 + IAI46_24940 0.89 +0.5 5,322,032 + IAI46_24940 0.89 +0.6 5,322,032 + IAI46_24940 0.89 -0.4 5,322,033 - IAI46_24940 0.89 +1.3 5,322,033 - IAI46_24940 0.89 +0.4 5,322,033 - IAI46_24940 0.89 +0.5 5,322,042 - -0.4 5,322,077 + +0.3 5,322,078 - -0.1 5,322,088 + -0.7 5,322,088 + +0.6 5,322,090 + -1.4 5,322,090 + +1.4 5,322,090 + -0.3 5,322,090 + +0.3 5,322,091 - -0.1 5,322,091 - -0.1 5,322,091 - -1.1 5,322,091 - +0.1 5,322,091 - -0.2 5,322,091 - -0.2 5,322,097 + +1.8 5,322,097 + -0.9 5,322,097 + +0.4 5,322,097 + -0.5 5,322,097 + -1.1 5,322,097 + +0.1 5,322,097 + +0.1 5,322,097 + -0.1 5,322,098 - +0.0 5,322,098 - +0.9 5,322,098 - -0.0 5,322,098 - -0.4 5,322,098 - -0.2 5,322,128 - +0.5 5,322,155 + -0.0 5,322,156 - +0.6 5,322,156 - -0.3 5,322,176 + -0.2 5,322,176 + +1.5 5,322,176 + -0.6 5,322,177 - -0.8 5,322,179 - -0.1 5,322,236 + +0.2 5,322,236 + +0.1 5,322,237 - +0.6 5,322,237 - +0.6 5,322,237 - +0.2 5,322,237 - -1.9 5,322,251 - +0.0 5,322,273 - -0.3 5,322,273 - +0.6 5,322,293 + +0.4 5,322,294 - -0.3 5,322,294 - +1.2 5,322,294 - -0.7 5,322,294 - -0.8 5,322,320 + +0.4 5,322,351 + +0.4 5,322,352 - -0.1 5,322,420 - +0.8
Or see this region's nucleotide sequence