Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24085 and IAI46_24090 are separated by 18 nucleotides IAI46_24090 and IAI46_24095 are separated by 22 nucleotides
IAI46_24085: IAI46_24085 - fimbrial protein, at 5,130,335 to 5,131,339
_24085
IAI46_24090: IAI46_24090 - type 1 fimbrial protein, at 5,131,358 to 5,131,897
_24090
IAI46_24095: IAI46_24095 - O-antigen ligase C-terminal domain-containing protein, at 5,131,920 to 5,133,554
_24095
Position (kb)
5131
5132 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5130.410 kb on + strand at 5130.411 kb on - strand at 5130.411 kb on - strand at 5130.443 kb on + strand, within IAI46_24085 at 5130.443 kb on + strand, within IAI46_24085 at 5130.443 kb on + strand, within IAI46_24085 at 5130.466 kb on + strand, within IAI46_24085 at 5130.466 kb on + strand, within IAI46_24085 at 5130.466 kb on + strand, within IAI46_24085 at 5130.521 kb on + strand, within IAI46_24085 at 5130.522 kb on - strand, within IAI46_24085 at 5130.522 kb on - strand, within IAI46_24085 at 5130.523 kb on + strand, within IAI46_24085 at 5130.524 kb on - strand, within IAI46_24085 at 5130.536 kb on + strand, within IAI46_24085 at 5130.536 kb on + strand, within IAI46_24085 at 5130.536 kb on + strand, within IAI46_24085 at 5130.536 kb on + strand, within IAI46_24085 at 5130.537 kb on - strand, within IAI46_24085 at 5130.537 kb on - strand, within IAI46_24085 at 5130.537 kb on - strand, within IAI46_24085 at 5130.559 kb on + strand, within IAI46_24085 at 5130.572 kb on + strand, within IAI46_24085 at 5130.572 kb on + strand, within IAI46_24085 at 5130.573 kb on - strand, within IAI46_24085 at 5130.573 kb on - strand, within IAI46_24085 at 5130.635 kb on + strand, within IAI46_24085 at 5130.635 kb on + strand, within IAI46_24085 at 5130.636 kb on - strand, within IAI46_24085 at 5130.636 kb on - strand, within IAI46_24085 at 5130.636 kb on - strand, within IAI46_24085 at 5130.645 kb on + strand, within IAI46_24085 at 5130.646 kb on - strand, within IAI46_24085 at 5130.673 kb on + strand, within IAI46_24085 at 5130.683 kb on + strand, within IAI46_24085 at 5130.684 kb on - strand, within IAI46_24085 at 5130.684 kb on - strand, within IAI46_24085 at 5130.701 kb on + strand, within IAI46_24085 at 5130.702 kb on - strand, within IAI46_24085 at 5130.719 kb on + strand, within IAI46_24085 at 5130.720 kb on - strand, within IAI46_24085 at 5130.746 kb on + strand, within IAI46_24085 at 5130.747 kb on - strand, within IAI46_24085 at 5130.747 kb on - strand, within IAI46_24085 at 5130.760 kb on + strand, within IAI46_24085 at 5130.764 kb on + strand, within IAI46_24085 at 5130.764 kb on + strand, within IAI46_24085 at 5130.765 kb on - strand, within IAI46_24085 at 5130.765 kb on - strand, within IAI46_24085 at 5130.814 kb on + strand, within IAI46_24085 at 5130.815 kb on - strand, within IAI46_24085 at 5130.857 kb on + strand, within IAI46_24085 at 5130.857 kb on + strand, within IAI46_24085 at 5130.935 kb on + strand, within IAI46_24085 at 5130.936 kb on - strand, within IAI46_24085 at 5130.947 kb on - strand, within IAI46_24085 at 5131.026 kb on - strand, within IAI46_24085 at 5131.037 kb on - strand, within IAI46_24085 at 5131.142 kb on - strand, within IAI46_24085 at 5131.142 kb on - strand, within IAI46_24085 at 5131.151 kb on - strand, within IAI46_24085 at 5131.181 kb on - strand, within IAI46_24085 at 5131.280 kb on - strand at 5131.337 kb on + strand at 5131.366 kb on - strand at 5131.398 kb on + strand at 5131.399 kb on - strand at 5131.489 kb on + strand, within IAI46_24090 at 5131.490 kb on - strand, within IAI46_24090 at 5131.551 kb on - strand, within IAI46_24090 at 5131.551 kb on - strand, within IAI46_24090 at 5131.564 kb on + strand, within IAI46_24090 at 5131.564 kb on + strand, within IAI46_24090 at 5131.564 kb on + strand, within IAI46_24090 at 5131.603 kb on + strand, within IAI46_24090 at 5131.603 kb on + strand, within IAI46_24090 at 5131.787 kb on - strand, within IAI46_24090 at 5131.805 kb on + strand, within IAI46_24090 at 5131.805 kb on + strand, within IAI46_24090 at 5131.806 kb on - strand, within IAI46_24090 at 5131.806 kb on - strand, within IAI46_24090 at 5131.837 kb on + strand, within IAI46_24090 at 5131.837 kb on + strand, within IAI46_24090 at 5131.889 kb on + strand at 5131.889 kb on + strand at 5131.890 kb on - strand at 5131.895 kb on + strand at 5131.896 kb on - strand at 5131.896 kb on - strand at 5131.896 kb on - strand at 5131.896 kb on - strand at 5131.934 kb on + strand at 5131.968 kb on + strand at 5131.969 kb on - strand at 5131.969 kb on - strand at 5131.992 kb on + strand at 5131.992 kb on + strand at 5131.993 kb on - strand at 5132.022 kb on + strand at 5132.022 kb on + strand at 5132.022 kb on + strand at 5132.023 kb on - strand at 5132.023 kb on - strand at 5132.023 kb on - strand at 5132.023 kb on - strand at 5132.071 kb on + strand at 5132.072 kb on - strand at 5132.120 kb on + strand, within IAI46_24095 at 5132.284 kb on + strand, within IAI46_24095 at 5132.284 kb on + strand, within IAI46_24095 at 5132.463 kb on + strand, within IAI46_24095 at 5132.528 kb on - strand, within IAI46_24095 at 5132.616 kb on + strand, within IAI46_24095 at 5132.616 kb on + strand, within IAI46_24095 at 5132.617 kb on - strand, within IAI46_24095 at 5132.698 kb on + strand, within IAI46_24095 at 5132.698 kb on + strand, within IAI46_24095 at 5132.698 kb on + strand, within IAI46_24095 at 5132.699 kb on - strand, within IAI46_24095 at 5132.699 kb on - strand, within IAI46_24095 at 5132.720 kb on + strand, within IAI46_24095 at 5132.720 kb on + strand, within IAI46_24095 at 5132.721 kb on - strand, within IAI46_24095 at 5132.751 kb on - strand, within IAI46_24095 at 5132.754 kb on + strand, within IAI46_24095 at 5132.770 kb on + strand, within IAI46_24095 at 5132.797 kb on + strand, within IAI46_24095 at 5132.797 kb on + strand, within IAI46_24095 at 5132.798 kb on - strand, within IAI46_24095 at 5132.798 kb on - strand, within IAI46_24095 at 5132.798 kb on - strand, within IAI46_24095 at 5132.798 kb on - strand, within IAI46_24095 at 5132.798 kb on - strand, within IAI46_24095 at 5132.844 kb on + strand, within IAI46_24095
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 5,130,410 + -1.4 5,130,411 - +0.9 5,130,411 - +1.4 5,130,443 + IAI46_24085 0.11 -0.2 5,130,443 + IAI46_24085 0.11 +0.4 5,130,443 + IAI46_24085 0.11 -0.8 5,130,466 + IAI46_24085 0.13 -0.3 5,130,466 + IAI46_24085 0.13 +1.5 5,130,466 + IAI46_24085 0.13 +1.1 5,130,521 + IAI46_24085 0.19 -0.0 5,130,522 - IAI46_24085 0.19 -0.0 5,130,522 - IAI46_24085 0.19 -1.6 5,130,523 + IAI46_24085 0.19 +0.5 5,130,524 - IAI46_24085 0.19 +1.1 5,130,536 + IAI46_24085 0.20 -0.1 5,130,536 + IAI46_24085 0.20 +0.1 5,130,536 + IAI46_24085 0.20 +1.1 5,130,536 + IAI46_24085 0.20 -1.1 5,130,537 - IAI46_24085 0.20 +1.0 5,130,537 - IAI46_24085 0.20 +0.6 5,130,537 - IAI46_24085 0.20 +0.0 5,130,559 + IAI46_24085 0.22 +0.4 5,130,572 + IAI46_24085 0.24 +0.3 5,130,572 + IAI46_24085 0.24 -0.3 5,130,573 - IAI46_24085 0.24 -0.2 5,130,573 - IAI46_24085 0.24 +1.4 5,130,635 + IAI46_24085 0.30 +1.4 5,130,635 + IAI46_24085 0.30 +0.0 5,130,636 - IAI46_24085 0.30 +0.8 5,130,636 - IAI46_24085 0.30 +0.4 5,130,636 - IAI46_24085 0.30 +1.3 5,130,645 + IAI46_24085 0.31 +0.2 5,130,646 - IAI46_24085 0.31 +0.4 5,130,673 + IAI46_24085 0.34 -0.0 5,130,683 + IAI46_24085 0.35 +0.2 5,130,684 - IAI46_24085 0.35 -1.0 5,130,684 - IAI46_24085 0.35 +0.5 5,130,701 + IAI46_24085 0.36 -0.6 5,130,702 - IAI46_24085 0.37 +0.7 5,130,719 + IAI46_24085 0.38 +0.4 5,130,720 - IAI46_24085 0.38 +1.3 5,130,746 + IAI46_24085 0.41 +0.0 5,130,747 - IAI46_24085 0.41 -0.3 5,130,747 - IAI46_24085 0.41 -0.0 5,130,760 + IAI46_24085 0.42 +2.1 5,130,764 + IAI46_24085 0.43 +0.2 5,130,764 + IAI46_24085 0.43 +0.8 5,130,765 - IAI46_24085 0.43 +0.4 5,130,765 - IAI46_24085 0.43 -0.2 5,130,814 + IAI46_24085 0.48 -0.0 5,130,815 - IAI46_24085 0.48 -0.8 5,130,857 + IAI46_24085 0.52 +0.7 5,130,857 + IAI46_24085 0.52 -0.3 5,130,935 + IAI46_24085 0.60 +0.1 5,130,936 - IAI46_24085 0.60 +0.1 5,130,947 - IAI46_24085 0.61 -1.4 5,131,026 - IAI46_24085 0.69 +0.3 5,131,037 - IAI46_24085 0.70 -0.2 5,131,142 - IAI46_24085 0.80 -0.9 5,131,142 - IAI46_24085 0.80 -0.2 5,131,151 - IAI46_24085 0.81 +0.1 5,131,181 - IAI46_24085 0.84 +0.2 5,131,280 - +0.3 5,131,337 + +0.3 5,131,366 - +0.2 5,131,398 + -0.0 5,131,399 - +0.8 5,131,489 + IAI46_24090 0.24 +0.5 5,131,490 - IAI46_24090 0.24 +0.8 5,131,551 - IAI46_24090 0.36 +0.9 5,131,551 - IAI46_24090 0.36 +0.6 5,131,564 + IAI46_24090 0.38 +0.6 5,131,564 + IAI46_24090 0.38 -0.1 5,131,564 + IAI46_24090 0.38 +0.3 5,131,603 + IAI46_24090 0.45 -0.0 5,131,603 + IAI46_24090 0.45 +0.4 5,131,787 - IAI46_24090 0.79 +0.5 5,131,805 + IAI46_24090 0.83 +0.4 5,131,805 + IAI46_24090 0.83 -0.1 5,131,806 - IAI46_24090 0.83 +0.3 5,131,806 - IAI46_24090 0.83 +0.6 5,131,837 + IAI46_24090 0.89 +0.2 5,131,837 + IAI46_24090 0.89 +1.1 5,131,889 + -0.5 5,131,889 + +0.7 5,131,890 - -0.2 5,131,895 + +0.2 5,131,896 - +0.4 5,131,896 - +0.4 5,131,896 - -0.5 5,131,896 - +0.5 5,131,934 + +0.2 5,131,968 + +2.3 5,131,969 - -0.3 5,131,969 - +0.0 5,131,992 + -1.1 5,131,992 + -2.6 5,131,993 - -0.2 5,132,022 + -0.0 5,132,022 + +0.5 5,132,022 + +1.6 5,132,023 - -0.9 5,132,023 - +0.2 5,132,023 - +0.7 5,132,023 - -0.7 5,132,071 + +0.4 5,132,072 - +0.4 5,132,120 + IAI46_24095 0.12 +1.3 5,132,284 + IAI46_24095 0.22 -1.6 5,132,284 + IAI46_24095 0.22 +0.1 5,132,463 + IAI46_24095 0.33 +0.6 5,132,528 - IAI46_24095 0.37 -0.1 5,132,616 + IAI46_24095 0.43 +0.2 5,132,616 + IAI46_24095 0.43 +0.8 5,132,617 - IAI46_24095 0.43 +0.6 5,132,698 + IAI46_24095 0.48 +0.9 5,132,698 + IAI46_24095 0.48 +0.2 5,132,698 + IAI46_24095 0.48 +1.0 5,132,699 - IAI46_24095 0.48 -0.3 5,132,699 - IAI46_24095 0.48 -1.1 5,132,720 + IAI46_24095 0.49 -0.0 5,132,720 + IAI46_24095 0.49 +0.8 5,132,721 - IAI46_24095 0.49 +0.1 5,132,751 - IAI46_24095 0.51 +0.5 5,132,754 + IAI46_24095 0.51 -0.0 5,132,770 + IAI46_24095 0.52 -0.2 5,132,797 + IAI46_24095 0.54 +2.1 5,132,797 + IAI46_24095 0.54 +0.4 5,132,798 - IAI46_24095 0.54 +0.5 5,132,798 - IAI46_24095 0.54 +0.6 5,132,798 - IAI46_24095 0.54 -0.0 5,132,798 - IAI46_24095 0.54 -0.3 5,132,798 - IAI46_24095 0.54 +0.6 5,132,844 + IAI46_24095 0.57 +0.6
Or see this region's nucleotide sequence