Strain Fitness in Serratia liquefaciens MT49 around IAI46_23480

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23465 and IAI46_23470 are separated by 96 nucleotidesIAI46_23470 and IAI46_23475 are separated by 131 nucleotidesIAI46_23475 and IAI46_23480 are separated by 9 nucleotidesIAI46_23480 and IAI46_23485 are separated by 8 nucleotidesIAI46_23485 and IAI46_23490 overlap by 4 nucleotides IAI46_23465: IAI46_23465 - 30S ribosomal protein S7, at 4,996,097 to 4,996,567 _23465 IAI46_23470: IAI46_23470 - 30S ribosomal protein S12, at 4,996,664 to 4,997,038 _23470 IAI46_23475: IAI46_23475 - sulfurtransferase complex subunit TusB, at 4,997,170 to 4,997,457 _23475 IAI46_23480: IAI46_23480 - sulfurtransferase complex subunit TusC, at 4,997,467 to 4,997,826 _23480 IAI46_23485: IAI46_23485 - sulfurtransferase complex subunit TusD, at 4,997,835 to 4,998,221 _23485 IAI46_23490: IAI46_23490 - transcriptional regulator, at 4,998,218 to 4,998,946 _23490 Position (kb) 4997 4998Strain fitness (log2 ratio) -2 -1 0 1 2at 4997.106 kb on - strandat 4997.106 kb on - strandat 4997.153 kb on - strandat 4997.154 kb on + strandat 4997.154 kb on + strandat 4997.469 kb on - strandat 4998.271 kb on - strandat 4998.271 kb on - strandat 4998.277 kb on - strandat 4998.277 kb on - strandat 4998.277 kb on - strandat 4998.277 kb on - strandat 4998.296 kb on - strand, within IAI46_23490at 4998.369 kb on - strand, within IAI46_23490at 4998.401 kb on - strand, within IAI46_23490at 4998.413 kb on - strand, within IAI46_23490at 4998.560 kb on - strand, within IAI46_23490at 4998.560 kb on - strand, within IAI46_23490at 4998.649 kb on - strand, within IAI46_23490at 4998.695 kb on - strand, within IAI46_23490at 4998.695 kb on - strand, within IAI46_23490at 4998.695 kb on - strand, within IAI46_23490

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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4,997,106 - +0.2
4,997,106 - +1.4
4,997,153 - +0.2
4,997,154 + +0.9
4,997,154 + -1.4
4,997,469 - +1.2
4,998,271 - -0.3
4,998,271 - -1.8
4,998,277 - -2.0
4,998,277 - +1.2
4,998,277 - -0.2
4,998,277 - +2.6
4,998,296 - IAI46_23490 0.11 -0.4
4,998,369 - IAI46_23490 0.21 +0.4
4,998,401 - IAI46_23490 0.25 -1.1
4,998,413 - IAI46_23490 0.27 +0.2
4,998,560 - IAI46_23490 0.47 -0.0
4,998,560 - IAI46_23490 0.47 +0.4
4,998,649 - IAI46_23490 0.59 -0.3
4,998,695 - IAI46_23490 0.65 -0.5
4,998,695 - IAI46_23490 0.65 -1.6
4,998,695 - IAI46_23490 0.65 -1.1

Or see this region's nucleotide sequence