Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_19385 and IAI46_19390 overlap by 4 nucleotides IAI46_19390 and IAI46_19395 are separated by 155 nucleotides
IAI46_19385: IAI46_19385 - stationary phase inducible protein CsiE, at 4,089,690 to 4,090,955
_19385
IAI46_19390: IAI46_19390 - 3-phenylpropionate MFS transporter, at 4,090,952 to 4,092,103
_19390
IAI46_19395: IAI46_19395 - serine hydroxymethyltransferase, at 4,092,259 to 4,093,512
_19395
Position (kb) 4090
4091
4092
4093 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4090.137 kb on + strand, within IAI46_19385 at 4090.258 kb on + strand, within IAI46_19385 at 4090.341 kb on + strand, within IAI46_19385 at 4090.517 kb on + strand, within IAI46_19385 at 4090.544 kb on + strand, within IAI46_19385 at 4090.544 kb on + strand, within IAI46_19385 at 4090.544 kb on + strand, within IAI46_19385 at 4090.545 kb on - strand, within IAI46_19385 at 4090.545 kb on - strand, within IAI46_19385 at 4090.548 kb on + strand, within IAI46_19385 at 4090.548 kb on + strand, within IAI46_19385 at 4090.549 kb on - strand, within IAI46_19385 at 4090.565 kb on + strand, within IAI46_19385 at 4090.602 kb on + strand, within IAI46_19385 at 4090.602 kb on + strand, within IAI46_19385 at 4090.603 kb on - strand, within IAI46_19385 at 4090.608 kb on - strand, within IAI46_19385 at 4090.760 kb on - strand, within IAI46_19385 at 4090.803 kb on + strand, within IAI46_19385 at 4090.851 kb on + strand at 4090.852 kb on - strand at 4090.896 kb on + strand at 4091.330 kb on - strand, within IAI46_19390 at 4091.335 kb on + strand, within IAI46_19390 at 4091.379 kb on + strand, within IAI46_19390 at 4091.379 kb on + strand, within IAI46_19390 at 4091.419 kb on - strand, within IAI46_19390 at 4091.419 kb on - strand, within IAI46_19390 at 4091.436 kb on + strand, within IAI46_19390 at 4091.437 kb on - strand, within IAI46_19390 at 4091.437 kb on - strand, within IAI46_19390 at 4091.437 kb on - strand, within IAI46_19390 at 4091.504 kb on + strand, within IAI46_19390 at 4091.504 kb on + strand, within IAI46_19390 at 4091.504 kb on + strand, within IAI46_19390 at 4091.504 kb on + strand, within IAI46_19390 at 4091.605 kb on + strand, within IAI46_19390 at 4091.635 kb on + strand, within IAI46_19390 at 4092.099 kb on - strand at 4092.158 kb on + strand at 4092.158 kb on + strand at 4092.159 kb on - strand at 4092.159 kb on - strand at 4092.179 kb on - strand at 4092.186 kb on + strand at 4092.260 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 4,090,137 + IAI46_19385 0.35 -0.1 4,090,258 + IAI46_19385 0.45 -0.8 4,090,341 + IAI46_19385 0.51 -0.8 4,090,517 + IAI46_19385 0.65 -0.4 4,090,544 + IAI46_19385 0.67 +0.5 4,090,544 + IAI46_19385 0.67 +0.3 4,090,544 + IAI46_19385 0.67 -0.3 4,090,545 - IAI46_19385 0.68 +0.1 4,090,545 - IAI46_19385 0.68 +1.1 4,090,548 + IAI46_19385 0.68 -0.3 4,090,548 + IAI46_19385 0.68 -0.8 4,090,549 - IAI46_19385 0.68 +0.4 4,090,565 + IAI46_19385 0.69 -0.4 4,090,602 + IAI46_19385 0.72 -0.4 4,090,602 + IAI46_19385 0.72 -0.4 4,090,603 - IAI46_19385 0.72 -0.1 4,090,608 - IAI46_19385 0.73 +0.6 4,090,760 - IAI46_19385 0.85 +1.9 4,090,803 + IAI46_19385 0.88 +0.6 4,090,851 + +0.4 4,090,852 - +1.1 4,090,896 + +0.1 4,091,330 - IAI46_19390 0.33 +0.2 4,091,335 + IAI46_19390 0.33 -0.3 4,091,379 + IAI46_19390 0.37 +1.5 4,091,379 + IAI46_19390 0.37 -0.5 4,091,419 - IAI46_19390 0.41 -0.4 4,091,419 - IAI46_19390 0.41 +0.5 4,091,436 + IAI46_19390 0.42 -2.0 4,091,437 - IAI46_19390 0.42 +1.2 4,091,437 - IAI46_19390 0.42 -0.1 4,091,437 - IAI46_19390 0.42 -0.4 4,091,504 + IAI46_19390 0.48 +0.5 4,091,504 + IAI46_19390 0.48 +0.5 4,091,504 + IAI46_19390 0.48 +0.4 4,091,504 + IAI46_19390 0.48 -0.2 4,091,605 + IAI46_19390 0.57 +0.1 4,091,635 + IAI46_19390 0.59 +0.1 4,092,099 - +0.5 4,092,158 + +0.2 4,092,158 + +1.2 4,092,159 - +0.1 4,092,159 - -0.1 4,092,179 - -0.3 4,092,186 + -0.8 4,092,260 + -0.7
Or see this region's nucleotide sequence