Strain Fitness in Serratia liquefaciens MT49 around IAI46_14830

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14820 and IAI46_14825 are separated by 54 nucleotidesIAI46_14825 and IAI46_14830 are separated by 416 nucleotidesIAI46_14830 and IAI46_14835 are separated by 100 nucleotides IAI46_14820: IAI46_14820 - PTS mannose transporter subunit IID, at 3,139,978 to 3,140,820 _14820 IAI46_14825: IAI46_14825 - DUF986 domain-containing protein, at 3,140,875 to 3,141,333 _14825 IAI46_14830: IAI46_14830 - manganese efflux pump MntP, at 3,141,750 to 3,142,319 _14830 IAI46_14835: IAI46_14835 - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 3,142,420 to 3,143,241 _14835 Position (kb) 3141 3142 3143Strain fitness (log2 ratio) -1 0 1at 3140.894 kb on + strandat 3140.894 kb on + strandat 3140.895 kb on - strandat 3140.897 kb on + strandat 3141.001 kb on - strand, within IAI46_14825at 3141.054 kb on + strand, within IAI46_14825at 3141.055 kb on - strand, within IAI46_14825at 3141.080 kb on + strand, within IAI46_14825at 3141.089 kb on - strand, within IAI46_14825at 3141.089 kb on - strand, within IAI46_14825at 3141.104 kb on + strand, within IAI46_14825at 3141.122 kb on - strand, within IAI46_14825at 3141.125 kb on + strand, within IAI46_14825at 3141.131 kb on - strand, within IAI46_14825at 3141.207 kb on + strand, within IAI46_14825at 3141.390 kb on - strandat 3141.455 kb on - strandat 3141.519 kb on + strandat 3141.544 kb on + strandat 3141.549 kb on + strandat 3141.549 kb on + strandat 3141.549 kb on + strandat 3141.684 kb on + strandat 3141.684 kb on + strandat 3141.718 kb on + strandat 3141.718 kb on + strandat 3141.742 kb on + strandat 3141.743 kb on - strandat 3141.747 kb on + strandat 3141.764 kb on + strandat 3141.896 kb on + strand, within IAI46_14830at 3141.939 kb on + strand, within IAI46_14830at 3141.939 kb on + strand, within IAI46_14830at 3141.940 kb on - strand, within IAI46_14830at 3141.984 kb on - strand, within IAI46_14830at 3142.184 kb on + strand, within IAI46_14830at 3142.184 kb on + strand, within IAI46_14830at 3142.185 kb on - strand, within IAI46_14830at 3142.377 kb on + strandat 3142.378 kb on - strandat 3142.422 kb on - strandat 3142.658 kb on + strand, within IAI46_14835at 3142.680 kb on - strand, within IAI46_14835at 3142.767 kb on - strand, within IAI46_14835at 3142.771 kb on - strand, within IAI46_14835at 3142.906 kb on - strand, within IAI46_14835at 3142.906 kb on - strand, within IAI46_14835at 3142.906 kb on - strand, within IAI46_14835at 3142.946 kb on + strand, within IAI46_14835at 3143.235 kb on - strandat 3143.272 kb on + strandat 3143.277 kb on + strandat 3143.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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3,140,894 + +0.3
3,140,894 + -1.1
3,140,895 - -0.8
3,140,897 + +0.2
3,141,001 - IAI46_14825 0.27 -1.4
3,141,054 + IAI46_14825 0.39 +0.7
3,141,055 - IAI46_14825 0.39 +0.0
3,141,080 + IAI46_14825 0.45 -0.3
3,141,089 - IAI46_14825 0.47 +0.1
3,141,089 - IAI46_14825 0.47 -0.5
3,141,104 + IAI46_14825 0.50 +0.6
3,141,122 - IAI46_14825 0.54 -0.2
3,141,125 + IAI46_14825 0.54 +0.7
3,141,131 - IAI46_14825 0.56 +0.8
3,141,207 + IAI46_14825 0.72 +1.1
3,141,390 - -0.4
3,141,455 - -0.4
3,141,519 + -0.3
3,141,544 + -0.4
3,141,549 + -0.3
3,141,549 + -0.3
3,141,549 + +0.4
3,141,684 + -0.9
3,141,684 + -0.6
3,141,718 + +0.5
3,141,718 + +0.2
3,141,742 + -0.1
3,141,743 - +1.6
3,141,747 + -0.0
3,141,764 + -1.0
3,141,896 + IAI46_14830 0.26 +0.9
3,141,939 + IAI46_14830 0.33 +0.0
3,141,939 + IAI46_14830 0.33 +0.4
3,141,940 - IAI46_14830 0.33 +0.6
3,141,984 - IAI46_14830 0.41 +0.5
3,142,184 + IAI46_14830 0.76 +0.3
3,142,184 + IAI46_14830 0.76 +0.7
3,142,185 - IAI46_14830 0.76 -0.0
3,142,377 + -0.0
3,142,378 - +0.0
3,142,422 - -0.8
3,142,658 + IAI46_14835 0.29 -0.2
3,142,680 - IAI46_14835 0.32 -0.0
3,142,767 - IAI46_14835 0.42 +0.2
3,142,771 - IAI46_14835 0.43 -0.9
3,142,906 - IAI46_14835 0.59 -1.3
3,142,906 - IAI46_14835 0.59 +0.4
3,142,906 - IAI46_14835 0.59 +0.4
3,142,946 + IAI46_14835 0.64 -0.5
3,143,235 - +0.6
3,143,272 + -0.3
3,143,277 + -0.9
3,143,278 - +0.8

Or see this region's nucleotide sequence