Strain Fitness in Serratia liquefaciens MT49 around IAI46_10965

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10955 and IAI46_10960 are separated by 3 nucleotidesIAI46_10960 and IAI46_10965 are separated by 98 nucleotidesIAI46_10965 and IAI46_10970 are separated by 43 nucleotidesIAI46_10970 and IAI46_10975 are separated by 66 nucleotidesIAI46_10975 and IAI46_10980 are separated by 192 nucleotides IAI46_10955: IAI46_10955 - threonine--tRNA ligase, at 2,315,654 to 2,317,582 _10955 IAI46_10960: IAI46_10960 - translation initiation factor IF-3, at 2,317,586 to 2,318,137 _10960 IAI46_10965: IAI46_10965 - 50S ribosomal protein L35, at 2,318,236 to 2,318,433 _10965 IAI46_10970: IAI46_10970 - 50S ribosomal protein L20, at 2,318,477 to 2,318,833 _10970 IAI46_10975: IAI46_10975 - pheST operon leader peptide PheM, at 2,318,900 to 2,318,995 _10975 IAI46_10980: IAI46_10980 - phenylalanine--tRNA ligase subunit alpha, at 2,319,188 to 2,320,171 _10980 Position (kb) 2318 2319Strain fitness (log2 ratio) -1 0 1at 2318.888 kb on + strandat 2318.898 kb on + strandat 2319.137 kb on + strandat 2319.144 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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2,318,888 + -0.8
2,318,898 + -0.7
2,319,137 + +0.2
2,319,144 + +1.0

Or see this region's nucleotide sequence