Strain Fitness in Serratia liquefaciens MT49 around IAI46_09070

Experiment: Nickel (II) chloride 80 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_09065 and IAI46_09070 are separated by 517 nucleotidesIAI46_09070 and IAI46_09075 are separated by 149 nucleotidesIAI46_09075 and IAI46_09080 are separated by 90 nucleotidesIAI46_09080 and IAI46_09085 are separated by 13 nucleotides IAI46_09065: IAI46_09065 - CDP-glycerol glycerophosphotransferase family protein, at 1,943,357 to 1,944,892 _09065 IAI46_09070: IAI46_09070 - endonuclease, at 1,945,410 to 1,946,234 _09070 IAI46_09075: IAI46_09075 - hypothetical protein, at 1,946,384 to 1,946,584 _09075 IAI46_09080: IAI46_09080 - cell envelope integrity protein TolA, at 1,946,675 to 1,947,118 _09080 IAI46_09085: IAI46_09085 - VTT domain-containing protein, at 1,947,132 to 1,947,626 _09085 Position (kb) 1945 1946 1947Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1944.445 kb on - strand, within IAI46_09065at 1944.445 kb on - strand, within IAI46_09065at 1944.473 kb on - strand, within IAI46_09065at 1944.874 kb on - strandat 1944.979 kb on + strandat 1945.071 kb on + strandat 1945.076 kb on + strandat 1945.190 kb on - strandat 1945.190 kb on - strandat 1945.190 kb on - strandat 1945.297 kb on + strandat 1945.300 kb on + strandat 1945.300 kb on + strandat 1945.301 kb on - strandat 1945.324 kb on - strandat 1945.324 kb on - strandat 1945.400 kb on + strandat 1945.400 kb on + strandat 1945.477 kb on + strandat 1945.477 kb on + strandat 1945.552 kb on + strand, within IAI46_09070at 1945.553 kb on - strand, within IAI46_09070at 1945.725 kb on + strand, within IAI46_09070at 1945.726 kb on - strand, within IAI46_09070at 1945.777 kb on + strand, within IAI46_09070at 1945.855 kb on + strand, within IAI46_09070at 1945.896 kb on + strand, within IAI46_09070at 1945.896 kb on + strand, within IAI46_09070at 1945.897 kb on - strand, within IAI46_09070at 1945.936 kb on - strand, within IAI46_09070at 1945.936 kb on - strand, within IAI46_09070at 1945.966 kb on + strand, within IAI46_09070at 1946.044 kb on - strand, within IAI46_09070at 1946.044 kb on - strand, within IAI46_09070at 1946.089 kb on - strand, within IAI46_09070at 1946.131 kb on - strand, within IAI46_09070at 1946.131 kb on - strand, within IAI46_09070at 1946.131 kb on - strand, within IAI46_09070at 1946.135 kb on - strand, within IAI46_09070at 1946.135 kb on - strand, within IAI46_09070at 1946.230 kb on + strandat 1946.230 kb on + strandat 1946.230 kb on + strandat 1946.230 kb on + strandat 1946.231 kb on - strandat 1946.231 kb on - strandat 1946.231 kb on - strandat 1946.231 kb on - strandat 1946.258 kb on - strandat 1946.258 kb on - strandat 1946.287 kb on - strandat 1946.298 kb on - strandat 1946.371 kb on + strandat 1946.371 kb on + strandat 1946.379 kb on + strandat 1946.379 kb on + strandat 1946.379 kb on + strandat 1946.390 kb on - strandat 1946.390 kb on - strandat 1946.398 kb on - strandat 1946.421 kb on + strand, within IAI46_09075at 1946.421 kb on + strand, within IAI46_09075at 1946.422 kb on - strand, within IAI46_09075at 1946.524 kb on - strand, within IAI46_09075at 1946.592 kb on + strandat 1946.641 kb on + strandat 1946.660 kb on - strandat 1946.719 kb on - strandat 1946.830 kb on + strand, within IAI46_09080at 1946.869 kb on + strand, within IAI46_09080at 1946.870 kb on - strand, within IAI46_09080at 1946.976 kb on + strand, within IAI46_09080at 1946.977 kb on - strand, within IAI46_09080at 1946.977 kb on - strand, within IAI46_09080at 1947.085 kb on + strandat 1947.133 kb on + strandat 1947.134 kb on - strandat 1947.200 kb on - strand, within IAI46_09085at 1947.200 kb on - strand, within IAI46_09085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
remove
1,944,445 - IAI46_09065 0.71 -1.1
1,944,445 - IAI46_09065 0.71 -0.0
1,944,473 - IAI46_09065 0.73 +0.3
1,944,874 - -0.2
1,944,979 + -0.2
1,945,071 + +0.8
1,945,076 + -0.4
1,945,190 - -0.9
1,945,190 - -1.1
1,945,190 - -2.0
1,945,297 + +0.4
1,945,300 + +1.3
1,945,300 + +0.2
1,945,301 - +1.4
1,945,324 - +1.3
1,945,324 - -0.5
1,945,400 + +0.4
1,945,400 + -0.8
1,945,477 + -0.4
1,945,477 + -0.8
1,945,552 + IAI46_09070 0.17 -0.7
1,945,553 - IAI46_09070 0.17 +0.3
1,945,725 + IAI46_09070 0.38 +0.2
1,945,726 - IAI46_09070 0.38 +1.2
1,945,777 + IAI46_09070 0.44 -0.6
1,945,855 + IAI46_09070 0.54 +0.7
1,945,896 + IAI46_09070 0.59 +0.4
1,945,896 + IAI46_09070 0.59 -0.8
1,945,897 - IAI46_09070 0.59 +0.9
1,945,936 - IAI46_09070 0.64 -0.5
1,945,936 - IAI46_09070 0.64 +0.3
1,945,966 + IAI46_09070 0.67 -0.2
1,946,044 - IAI46_09070 0.77 -0.0
1,946,044 - IAI46_09070 0.77 +0.4
1,946,089 - IAI46_09070 0.82 +0.4
1,946,131 - IAI46_09070 0.87 +2.9
1,946,131 - IAI46_09070 0.87 +0.3
1,946,131 - IAI46_09070 0.87 +1.4
1,946,135 - IAI46_09070 0.88 -1.8
1,946,135 - IAI46_09070 0.88 +0.5
1,946,230 + +0.4
1,946,230 + +0.0
1,946,230 + +0.1
1,946,230 + -0.6
1,946,231 - -0.0
1,946,231 - +2.3
1,946,231 - +0.3
1,946,231 - +1.3
1,946,258 - +0.1
1,946,258 - +0.1
1,946,287 - +0.1
1,946,298 - +0.9
1,946,371 + +1.0
1,946,371 + +1.1
1,946,379 + +1.3
1,946,379 + -0.7
1,946,379 + -0.3
1,946,390 - -0.9
1,946,390 - +0.2
1,946,398 - +0.1
1,946,421 + IAI46_09075 0.18 +0.8
1,946,421 + IAI46_09075 0.18 +0.5
1,946,422 - IAI46_09075 0.19 -1.1
1,946,524 - IAI46_09075 0.70 -1.8
1,946,592 + -0.2
1,946,641 + +0.4
1,946,660 - +0.8
1,946,719 - +0.7
1,946,830 + IAI46_09080 0.35 +1.1
1,946,869 + IAI46_09080 0.44 +1.7
1,946,870 - IAI46_09080 0.44 +1.4
1,946,976 + IAI46_09080 0.68 +2.3
1,946,977 - IAI46_09080 0.68 +0.4
1,946,977 - IAI46_09080 0.68 -1.3
1,947,085 + +0.7
1,947,133 + -1.2
1,947,134 - -0.9
1,947,200 - IAI46_09085 0.14 -0.8
1,947,200 - IAI46_09085 0.14 -0.3

Or see this region's nucleotide sequence