Strain Fitness in Serratia liquefaciens MT49 around IAI46_06820

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06815 and IAI46_06820 are separated by 162 nucleotidesIAI46_06820 and IAI46_06825 are separated by 35 nucleotidesIAI46_06825 and IAI46_06830 are separated by 82 nucleotides IAI46_06815: IAI46_06815 - adenosylhomocysteinase, at 1,446,543 to 1,447,646 _06815 IAI46_06820: IAI46_06820 - D-alanyl-D-alanine endopeptidase, at 1,447,809 to 1,448,738 _06820 IAI46_06825: IAI46_06825 - GNAT family N-acetyltransferase, at 1,448,774 to 1,449,229 _06825 IAI46_06830: IAI46_06830 - VOC family protein, at 1,449,312 to 1,449,716 _06830 Position (kb) 1447 1448 1449Strain fitness (log2 ratio) -2 -1 0 1at 1446.978 kb on - strand, within IAI46_06815at 1446.978 kb on - strand, within IAI46_06815at 1447.001 kb on + strand, within IAI46_06815at 1447.038 kb on - strand, within IAI46_06815at 1447.128 kb on + strand, within IAI46_06815at 1447.128 kb on + strand, within IAI46_06815at 1447.227 kb on + strand, within IAI46_06815at 1447.280 kb on - strand, within IAI46_06815at 1447.280 kb on - strand, within IAI46_06815at 1447.372 kb on + strand, within IAI46_06815at 1447.372 kb on + strand, within IAI46_06815at 1447.373 kb on - strand, within IAI46_06815at 1447.425 kb on - strand, within IAI46_06815at 1447.467 kb on + strand, within IAI46_06815at 1447.467 kb on + strand, within IAI46_06815at 1447.467 kb on + strand, within IAI46_06815at 1447.468 kb on - strand, within IAI46_06815at 1447.468 kb on - strand, within IAI46_06815at 1447.468 kb on - strand, within IAI46_06815at 1447.468 kb on - strand, within IAI46_06815at 1447.571 kb on + strandat 1447.572 kb on - strandat 1447.608 kb on + strandat 1447.608 kb on + strandat 1447.609 kb on - strandat 1447.609 kb on - strandat 1447.695 kb on + strandat 1447.733 kb on - strandat 1447.733 kb on - strandat 1447.763 kb on + strandat 1447.763 kb on + strandat 1447.765 kb on + strandat 1447.765 kb on + strandat 1447.765 kb on + strandat 1447.766 kb on - strandat 1447.766 kb on - strandat 1447.807 kb on + strandat 1447.808 kb on - strandat 1447.837 kb on + strandat 1447.838 kb on - strandat 1447.958 kb on + strand, within IAI46_06820at 1447.959 kb on - strand, within IAI46_06820at 1447.980 kb on + strand, within IAI46_06820at 1447.981 kb on - strand, within IAI46_06820at 1447.981 kb on - strand, within IAI46_06820at 1447.981 kb on - strand, within IAI46_06820at 1448.122 kb on - strand, within IAI46_06820at 1448.131 kb on + strand, within IAI46_06820at 1448.162 kb on + strand, within IAI46_06820at 1448.162 kb on + strand, within IAI46_06820at 1448.163 kb on - strand, within IAI46_06820at 1448.246 kb on + strand, within IAI46_06820at 1448.298 kb on + strand, within IAI46_06820at 1448.298 kb on + strand, within IAI46_06820at 1448.299 kb on - strand, within IAI46_06820at 1448.299 kb on - strand, within IAI46_06820at 1448.442 kb on + strand, within IAI46_06820at 1448.442 kb on + strand, within IAI46_06820at 1448.443 kb on - strand, within IAI46_06820at 1448.444 kb on + strand, within IAI46_06820at 1448.445 kb on - strand, within IAI46_06820at 1448.445 kb on - strand, within IAI46_06820at 1448.463 kb on - strand, within IAI46_06820at 1448.476 kb on + strand, within IAI46_06820at 1448.476 kb on + strand, within IAI46_06820at 1448.477 kb on - strand, within IAI46_06820at 1448.478 kb on + strand, within IAI46_06820at 1448.478 kb on + strand, within IAI46_06820at 1448.479 kb on - strand, within IAI46_06820at 1448.479 kb on - strand, within IAI46_06820at 1448.479 kb on - strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.608 kb on - strand, within IAI46_06820at 1448.691 kb on + strandat 1448.841 kb on + strand, within IAI46_06825at 1448.842 kb on - strand, within IAI46_06825at 1448.842 kb on - strand, within IAI46_06825at 1448.892 kb on + strand, within IAI46_06825at 1448.893 kb on - strand, within IAI46_06825at 1448.926 kb on - strand, within IAI46_06825at 1448.947 kb on + strand, within IAI46_06825at 1448.947 kb on + strand, within IAI46_06825at 1448.947 kb on + strand, within IAI46_06825at 1448.948 kb on - strand, within IAI46_06825at 1448.948 kb on - strand, within IAI46_06825at 1448.948 kb on - strand, within IAI46_06825at 1448.948 kb on - strand, within IAI46_06825at 1449.119 kb on - strand, within IAI46_06825at 1449.161 kb on + strand, within IAI46_06825at 1449.171 kb on + strand, within IAI46_06825at 1449.172 kb on - strand, within IAI46_06825at 1449.229 kb on + strandat 1449.230 kb on - strandat 1449.230 kb on - strandat 1449.259 kb on + strandat 1449.259 kb on + strandat 1449.260 kb on - strandat 1449.280 kb on + strandat 1449.280 kb on + strandat 1449.283 kb on + strandat 1449.284 kb on - strandat 1449.288 kb on + strandat 1449.364 kb on + strand, within IAI46_06830at 1449.375 kb on - strand, within IAI46_06830at 1449.459 kb on - strand, within IAI46_06830at 1449.479 kb on + strand, within IAI46_06830at 1449.480 kb on - strand, within IAI46_06830at 1449.480 kb on - strand, within IAI46_06830at 1449.480 kb on - strand, within IAI46_06830at 1449.492 kb on - strand, within IAI46_06830at 1449.614 kb on + strand, within IAI46_06830at 1449.614 kb on + strand, within IAI46_06830at 1449.615 kb on - strand, within IAI46_06830at 1449.615 kb on - strand, within IAI46_06830at 1449.615 kb on - strand, within IAI46_06830at 1449.631 kb on - strand, within IAI46_06830at 1449.720 kb on - strandat 1449.738 kb on - strandat 1449.738 kb on - strandat 1449.738 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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1,446,978 - IAI46_06815 0.39 +0.2
1,446,978 - IAI46_06815 0.39 -0.2
1,447,001 + IAI46_06815 0.41 +0.2
1,447,038 - IAI46_06815 0.45 +0.8
1,447,128 + IAI46_06815 0.53 -0.2
1,447,128 + IAI46_06815 0.53 +0.1
1,447,227 + IAI46_06815 0.62 -0.1
1,447,280 - IAI46_06815 0.67 +1.5
1,447,280 - IAI46_06815 0.67 -1.3
1,447,372 + IAI46_06815 0.75 -0.5
1,447,372 + IAI46_06815 0.75 -0.1
1,447,373 - IAI46_06815 0.75 +0.5
1,447,425 - IAI46_06815 0.80 -0.4
1,447,467 + IAI46_06815 0.84 +0.6
1,447,467 + IAI46_06815 0.84 -0.7
1,447,467 + IAI46_06815 0.84 +0.5
1,447,468 - IAI46_06815 0.84 +0.3
1,447,468 - IAI46_06815 0.84 -0.8
1,447,468 - IAI46_06815 0.84 -0.3
1,447,468 - IAI46_06815 0.84 +0.6
1,447,571 + +0.2
1,447,572 - +0.3
1,447,608 + -0.2
1,447,608 + -0.9
1,447,609 - +0.0
1,447,609 - +0.7
1,447,695 + +0.6
1,447,733 - -0.2
1,447,733 - -0.6
1,447,763 + +0.4
1,447,763 + +0.1
1,447,765 + -0.2
1,447,765 + +0.3
1,447,765 + +0.2
1,447,766 - +0.8
1,447,766 - -0.5
1,447,807 + -2.1
1,447,808 - +0.4
1,447,837 + -0.4
1,447,838 - -1.2
1,447,958 + IAI46_06820 0.16 +0.2
1,447,959 - IAI46_06820 0.16 -0.3
1,447,980 + IAI46_06820 0.18 +0.1
1,447,981 - IAI46_06820 0.18 -0.2
1,447,981 - IAI46_06820 0.18 -0.2
1,447,981 - IAI46_06820 0.18 +0.2
1,448,122 - IAI46_06820 0.34 -1.3
1,448,131 + IAI46_06820 0.35 +0.7
1,448,162 + IAI46_06820 0.38 +0.2
1,448,162 + IAI46_06820 0.38 +0.6
1,448,163 - IAI46_06820 0.38 -0.4
1,448,246 + IAI46_06820 0.47 +0.5
1,448,298 + IAI46_06820 0.53 +0.5
1,448,298 + IAI46_06820 0.53 +0.2
1,448,299 - IAI46_06820 0.53 -0.5
1,448,299 - IAI46_06820 0.53 +0.4
1,448,442 + IAI46_06820 0.68 -0.1
1,448,442 + IAI46_06820 0.68 +0.6
1,448,443 - IAI46_06820 0.68 -0.7
1,448,444 + IAI46_06820 0.68 +0.3
1,448,445 - IAI46_06820 0.68 +0.9
1,448,445 - IAI46_06820 0.68 +0.6
1,448,463 - IAI46_06820 0.70 +0.4
1,448,476 + IAI46_06820 0.72 -0.7
1,448,476 + IAI46_06820 0.72 +0.3
1,448,477 - IAI46_06820 0.72 +1.0
1,448,478 + IAI46_06820 0.72 -2.1
1,448,478 + IAI46_06820 0.72 +0.0
1,448,479 - IAI46_06820 0.72 +0.9
1,448,479 - IAI46_06820 0.72 -0.2
1,448,479 - IAI46_06820 0.72 -0.6
1,448,607 + IAI46_06820 0.86 +0.2
1,448,607 + IAI46_06820 0.86 -0.5
1,448,607 + IAI46_06820 0.86 +0.6
1,448,607 + IAI46_06820 0.86 +0.5
1,448,607 + IAI46_06820 0.86 +0.4
1,448,607 + IAI46_06820 0.86 -0.6
1,448,607 + IAI46_06820 0.86 +0.5
1,448,608 - IAI46_06820 0.86 +0.7
1,448,691 + +0.5
1,448,841 + IAI46_06825 0.15 +0.5
1,448,842 - IAI46_06825 0.15 -1.3
1,448,842 - IAI46_06825 0.15 +0.1
1,448,892 + IAI46_06825 0.26 +1.4
1,448,893 - IAI46_06825 0.26 -0.4
1,448,926 - IAI46_06825 0.33 -0.1
1,448,947 + IAI46_06825 0.38 +0.6
1,448,947 + IAI46_06825 0.38 +1.7
1,448,947 + IAI46_06825 0.38 +0.3
1,448,948 - IAI46_06825 0.38 -0.7
1,448,948 - IAI46_06825 0.38 +1.4
1,448,948 - IAI46_06825 0.38 -0.3
1,448,948 - IAI46_06825 0.38 +0.1
1,449,119 - IAI46_06825 0.76 -1.0
1,449,161 + IAI46_06825 0.85 +0.1
1,449,171 + IAI46_06825 0.87 -0.8
1,449,172 - IAI46_06825 0.87 +0.9
1,449,229 + +0.5
1,449,230 - -0.2
1,449,230 - -0.1
1,449,259 + -1.0
1,449,259 + -0.0
1,449,260 - +0.1
1,449,280 + -0.0
1,449,280 + +0.9
1,449,283 + -0.2
1,449,284 - +0.4
1,449,288 + +0.3
1,449,364 + IAI46_06830 0.13 +1.2
1,449,375 - IAI46_06830 0.16 -0.2
1,449,459 - IAI46_06830 0.36 +0.5
1,449,479 + IAI46_06830 0.41 -0.7
1,449,480 - IAI46_06830 0.41 -0.3
1,449,480 - IAI46_06830 0.41 +0.5
1,449,480 - IAI46_06830 0.41 +0.6
1,449,492 - IAI46_06830 0.44 -1.3
1,449,614 + IAI46_06830 0.75 -0.4
1,449,614 + IAI46_06830 0.75 +1.1
1,449,615 - IAI46_06830 0.75 +0.4
1,449,615 - IAI46_06830 0.75 -0.8
1,449,615 - IAI46_06830 0.75 +1.1
1,449,631 - IAI46_06830 0.79 +0.2
1,449,720 - -0.4
1,449,738 - +1.0
1,449,738 - +0.9
1,449,738 - +0.7

Or see this region's nucleotide sequence