Strain Fitness in Serratia liquefaciens MT49 around IAI46_06210

Experiment: Nickel (II) chloride 80 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_06205 and IAI46_06210 are separated by 18 nucleotidesIAI46_06210 and IAI46_06215 are separated by 152 nucleotidesIAI46_06215 and IAI46_06220 overlap by 7 nucleotides IAI46_06205: IAI46_06205 - 3',5'-cyclic-nucleotide phosphodiesterase, at 1,328,988 to 1,329,968 _06205 IAI46_06210: IAI46_06210 - type 2 GTP cyclohydrolase I, at 1,329,987 to 1,330,730 _06210 IAI46_06215: IAI46_06215 - 5-oxoprolinase subunit PxpB, at 1,330,883 to 1,331,539 _06215 IAI46_06220: IAI46_06220 - biotin-dependent carboxyltransferase family protein, at 1,331,533 to 1,332,465 _06220 Position (kb) 1329 1330 1331Strain fitness (log2 ratio) -2 -1 0 1 2at 1328.987 kb on - strandat 1329.106 kb on - strand, within IAI46_06205at 1329.106 kb on - strand, within IAI46_06205at 1329.136 kb on - strand, within IAI46_06205at 1329.136 kb on - strand, within IAI46_06205at 1329.231 kb on + strand, within IAI46_06205at 1329.231 kb on + strand, within IAI46_06205at 1329.231 kb on + strand, within IAI46_06205at 1329.232 kb on - strand, within IAI46_06205at 1329.233 kb on + strand, within IAI46_06205at 1329.233 kb on + strand, within IAI46_06205at 1329.233 kb on + strand, within IAI46_06205at 1329.246 kb on + strand, within IAI46_06205at 1329.246 kb on + strand, within IAI46_06205at 1329.251 kb on - strand, within IAI46_06205at 1329.273 kb on + strand, within IAI46_06205at 1329.274 kb on - strand, within IAI46_06205at 1329.279 kb on - strand, within IAI46_06205at 1329.316 kb on + strand, within IAI46_06205at 1329.347 kb on + strand, within IAI46_06205at 1329.347 kb on + strand, within IAI46_06205at 1329.347 kb on + strand, within IAI46_06205at 1329.347 kb on + strand, within IAI46_06205at 1329.347 kb on + strand, within IAI46_06205at 1329.347 kb on + strand, within IAI46_06205at 1329.347 kb on + strand, within IAI46_06205at 1329.347 kb on + strand, within IAI46_06205at 1329.348 kb on - strand, within IAI46_06205at 1329.351 kb on + strand, within IAI46_06205at 1329.351 kb on + strand, within IAI46_06205at 1329.352 kb on - strand, within IAI46_06205at 1329.352 kb on - strand, within IAI46_06205at 1329.352 kb on - strand, within IAI46_06205at 1329.390 kb on + strand, within IAI46_06205at 1329.395 kb on + strand, within IAI46_06205at 1329.517 kb on + strand, within IAI46_06205at 1329.518 kb on - strand, within IAI46_06205at 1329.518 kb on - strand, within IAI46_06205at 1329.711 kb on + strand, within IAI46_06205at 1329.845 kb on + strand, within IAI46_06205at 1329.932 kb on + strandat 1330.058 kb on + strandat 1330.058 kb on + strandat 1330.171 kb on + strand, within IAI46_06210at 1330.171 kb on + strand, within IAI46_06210at 1330.183 kb on - strand, within IAI46_06210at 1330.210 kb on + strand, within IAI46_06210at 1330.211 kb on - strand, within IAI46_06210at 1330.256 kb on + strand, within IAI46_06210at 1330.256 kb on + strand, within IAI46_06210at 1330.267 kb on - strand, within IAI46_06210at 1330.273 kb on - strand, within IAI46_06210at 1330.273 kb on - strand, within IAI46_06210at 1330.422 kb on - strand, within IAI46_06210at 1330.422 kb on - strand, within IAI46_06210at 1330.447 kb on + strand, within IAI46_06210at 1330.521 kb on - strand, within IAI46_06210at 1330.706 kb on + strandat 1330.778 kb on + strandat 1330.815 kb on - strandat 1330.867 kb on + strandat 1330.901 kb on + strandat 1330.902 kb on - strandat 1330.909 kb on - strandat 1330.909 kb on - strandat 1331.041 kb on + strand, within IAI46_06215at 1331.042 kb on - strand, within IAI46_06215at 1331.042 kb on - strand, within IAI46_06215at 1331.229 kb on + strand, within IAI46_06215at 1331.255 kb on + strand, within IAI46_06215at 1331.255 kb on + strand, within IAI46_06215at 1331.255 kb on + strand, within IAI46_06215at 1331.256 kb on - strand, within IAI46_06215at 1331.259 kb on + strand, within IAI46_06215at 1331.260 kb on - strand, within IAI46_06215at 1331.260 kb on - strand, within IAI46_06215at 1331.265 kb on - strand, within IAI46_06215at 1331.265 kb on - strand, within IAI46_06215at 1331.294 kb on + strand, within IAI46_06215at 1331.295 kb on - strand, within IAI46_06215at 1331.295 kb on - strand, within IAI46_06215at 1331.465 kb on + strand, within IAI46_06215at 1331.532 kb on + strandat 1331.532 kb on + strandat 1331.532 kb on + strandat 1331.532 kb on + strandat 1331.560 kb on + strandat 1331.673 kb on + strand, within IAI46_06220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
remove
1,328,987 - +0.6
1,329,106 - IAI46_06205 0.12 +0.3
1,329,106 - IAI46_06205 0.12 +0.9
1,329,136 - IAI46_06205 0.15 +0.2
1,329,136 - IAI46_06205 0.15 -0.6
1,329,231 + IAI46_06205 0.25 -2.1
1,329,231 + IAI46_06205 0.25 +0.1
1,329,231 + IAI46_06205 0.25 +1.0
1,329,232 - IAI46_06205 0.25 +2.0
1,329,233 + IAI46_06205 0.25 -2.1
1,329,233 + IAI46_06205 0.25 +1.0
1,329,233 + IAI46_06205 0.25 -1.6
1,329,246 + IAI46_06205 0.26 +2.2
1,329,246 + IAI46_06205 0.26 +0.6
1,329,251 - IAI46_06205 0.27 +0.3
1,329,273 + IAI46_06205 0.29 +0.4
1,329,274 - IAI46_06205 0.29 -0.4
1,329,279 - IAI46_06205 0.30 +0.3
1,329,316 + IAI46_06205 0.33 +0.3
1,329,347 + IAI46_06205 0.37 -0.2
1,329,347 + IAI46_06205 0.37 -0.0
1,329,347 + IAI46_06205 0.37 -0.7
1,329,347 + IAI46_06205 0.37 -0.2
1,329,347 + IAI46_06205 0.37 -2.1
1,329,347 + IAI46_06205 0.37 -0.9
1,329,347 + IAI46_06205 0.37 +0.6
1,329,347 + IAI46_06205 0.37 -0.6
1,329,348 - IAI46_06205 0.37 -1.1
1,329,351 + IAI46_06205 0.37 +0.3
1,329,351 + IAI46_06205 0.37 -0.7
1,329,352 - IAI46_06205 0.37 -1.5
1,329,352 - IAI46_06205 0.37 +0.2
1,329,352 - IAI46_06205 0.37 +0.8
1,329,390 + IAI46_06205 0.41 -1.1
1,329,395 + IAI46_06205 0.41 +0.1
1,329,517 + IAI46_06205 0.54 +0.7
1,329,518 - IAI46_06205 0.54 +0.4
1,329,518 - IAI46_06205 0.54 -0.4
1,329,711 + IAI46_06205 0.74 +1.3
1,329,845 + IAI46_06205 0.87 -0.3
1,329,932 + +1.0
1,330,058 + +1.2
1,330,058 + -0.3
1,330,171 + IAI46_06210 0.25 -1.0
1,330,171 + IAI46_06210 0.25 +0.6
1,330,183 - IAI46_06210 0.26 +0.5
1,330,210 + IAI46_06210 0.30 +0.2
1,330,211 - IAI46_06210 0.30 +0.1
1,330,256 + IAI46_06210 0.36 -1.1
1,330,256 + IAI46_06210 0.36 +0.3
1,330,267 - IAI46_06210 0.38 +0.2
1,330,273 - IAI46_06210 0.38 +0.3
1,330,273 - IAI46_06210 0.38 -0.0
1,330,422 - IAI46_06210 0.58 +1.3
1,330,422 - IAI46_06210 0.58 -0.0
1,330,447 + IAI46_06210 0.62 -0.8
1,330,521 - IAI46_06210 0.72 -0.2
1,330,706 + +0.7
1,330,778 + +0.3
1,330,815 - +0.3
1,330,867 + -1.3
1,330,901 + -0.2
1,330,902 - -1.0
1,330,909 - -0.0
1,330,909 - +0.0
1,331,041 + IAI46_06215 0.24 +0.2
1,331,042 - IAI46_06215 0.24 -0.9
1,331,042 - IAI46_06215 0.24 +0.5
1,331,229 + IAI46_06215 0.53 +0.1
1,331,255 + IAI46_06215 0.57 +1.6
1,331,255 + IAI46_06215 0.57 +2.6
1,331,255 + IAI46_06215 0.57 +0.2
1,331,256 - IAI46_06215 0.57 +1.5
1,331,259 + IAI46_06215 0.57 +0.0
1,331,260 - IAI46_06215 0.57 -0.2
1,331,260 - IAI46_06215 0.57 +0.9
1,331,265 - IAI46_06215 0.58 +1.4
1,331,265 - IAI46_06215 0.58 +0.4
1,331,294 + IAI46_06215 0.63 -0.4
1,331,295 - IAI46_06215 0.63 +0.4
1,331,295 - IAI46_06215 0.63 +0.6
1,331,465 + IAI46_06215 0.89 -0.4
1,331,532 + -0.8
1,331,532 + +0.3
1,331,532 + +0.3
1,331,532 + -0.0
1,331,560 + -0.3
1,331,673 + IAI46_06220 0.15 +0.5

Or see this region's nucleotide sequence