Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_04465 and IAI46_04470 are separated by 75 nucleotides IAI46_04470 and IAI46_04475 are separated by 506 nucleotides
IAI46_04465: IAI46_04465 - amino acid adenylation domain-containing protein, at 955,967 to 959,062
_04465
IAI46_04470: IAI46_04470 - glutamate racemase, at 959,138 to 960,739
_04470
IAI46_04475: IAI46_04475 - TonB-dependent receptor, at 961,246 to 963,369
_04475
Position (kb) 959
960
961 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 958.204 kb on - strand, within IAI46_04465 at 958.222 kb on + strand, within IAI46_04465 at 958.222 kb on + strand, within IAI46_04465 at 958.222 kb on + strand, within IAI46_04465 at 958.222 kb on + strand, within IAI46_04465 at 958.313 kb on - strand, within IAI46_04465 at 958.385 kb on + strand, within IAI46_04465 at 958.386 kb on - strand, within IAI46_04465 at 958.438 kb on + strand, within IAI46_04465 at 958.490 kb on + strand, within IAI46_04465 at 958.616 kb on - strand, within IAI46_04465 at 958.668 kb on + strand, within IAI46_04465 at 958.669 kb on - strand, within IAI46_04465 at 958.717 kb on + strand, within IAI46_04465 at 958.758 kb on + strand at 958.759 kb on - strand at 958.759 kb on - strand at 958.759 kb on - strand at 958.877 kb on - strand at 958.878 kb on + strand at 958.878 kb on + strand at 958.878 kb on + strand at 958.879 kb on - strand at 958.879 kb on - strand at 958.879 kb on - strand at 958.879 kb on - strand at 958.879 kb on - strand at 958.902 kb on + strand at 959.028 kb on + strand at 959.028 kb on + strand at 959.028 kb on + strand at 959.029 kb on - strand at 959.029 kb on - strand at 959.048 kb on + strand at 959.049 kb on - strand at 959.065 kb on + strand at 959.099 kb on - strand at 959.099 kb on - strand at 959.137 kb on - strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.166 kb on - strand at 959.166 kb on - strand at 959.166 kb on - strand at 959.246 kb on + strand at 959.246 kb on + strand at 959.246 kb on + strand at 959.246 kb on + strand at 959.246 kb on + strand at 959.247 kb on - strand at 959.247 kb on - strand at 959.247 kb on - strand at 959.284 kb on + strand at 959.285 kb on - strand at 959.285 kb on - strand at 959.285 kb on - strand at 959.288 kb on + strand at 959.332 kb on + strand, within IAI46_04470 at 959.471 kb on - strand, within IAI46_04470 at 959.514 kb on + strand, within IAI46_04470 at 959.515 kb on - strand, within IAI46_04470 at 959.720 kb on - strand, within IAI46_04470 at 959.804 kb on + strand, within IAI46_04470 at 959.804 kb on + strand, within IAI46_04470 at 959.804 kb on + strand, within IAI46_04470 at 959.805 kb on - strand, within IAI46_04470 at 959.807 kb on + strand, within IAI46_04470 at 960.217 kb on - strand, within IAI46_04470 at 960.240 kb on + strand, within IAI46_04470 at 960.240 kb on + strand, within IAI46_04470 at 960.245 kb on + strand, within IAI46_04470 at 960.245 kb on + strand, within IAI46_04470 at 960.340 kb on + strand, within IAI46_04470 at 960.341 kb on - strand, within IAI46_04470 at 960.341 kb on - strand, within IAI46_04470 at 960.406 kb on + strand, within IAI46_04470 at 960.406 kb on + strand, within IAI46_04470 at 960.407 kb on - strand, within IAI46_04470 at 960.577 kb on + strand, within IAI46_04470 at 960.577 kb on + strand, within IAI46_04470 at 960.578 kb on - strand, within IAI46_04470 at 960.591 kb on + strand at 960.592 kb on - strand at 960.592 kb on - strand at 960.644 kb on - strand at 960.644 kb on - strand at 960.654 kb on + strand at 960.655 kb on - strand at 960.701 kb on + strand at 960.702 kb on - strand at 960.773 kb on + strand at 960.906 kb on - strand at 961.058 kb on + strand at 961.096 kb on + strand at 961.136 kb on + strand at 961.136 kb on + strand at 961.136 kb on + strand at 961.137 kb on - strand at 961.137 kb on - strand at 961.190 kb on - strand at 961.193 kb on + strand at 961.194 kb on - strand at 961.194 kb on - strand at 961.239 kb on + strand at 961.240 kb on - strand at 961.240 kb on - strand at 961.245 kb on + strand at 961.245 kb on + strand at 961.245 kb on + strand at 961.245 kb on + strand at 961.246 kb on - strand at 961.246 kb on - strand at 961.355 kb on + strand at 961.355 kb on + strand at 961.355 kb on + strand at 961.422 kb on + strand at 961.423 kb on - strand at 961.428 kb on + strand at 961.537 kb on - strand, within IAI46_04475 at 961.672 kb on - strand, within IAI46_04475 at 961.723 kb on + strand, within IAI46_04475 at 961.723 kb on + strand, within IAI46_04475 at 961.739 kb on - strand, within IAI46_04475
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 958,204 - IAI46_04465 0.72 +0.9 958,222 + IAI46_04465 0.73 -0.3 958,222 + IAI46_04465 0.73 -0.6 958,222 + IAI46_04465 0.73 +0.4 958,222 + IAI46_04465 0.73 +0.2 958,313 - IAI46_04465 0.76 -0.1 958,385 + IAI46_04465 0.78 +1.2 958,386 - IAI46_04465 0.78 -0.7 958,438 + IAI46_04465 0.80 +0.3 958,490 + IAI46_04465 0.81 +0.6 958,616 - IAI46_04465 0.86 +1.2 958,668 + IAI46_04465 0.87 +1.0 958,669 - IAI46_04465 0.87 +0.0 958,717 + IAI46_04465 0.89 -0.4 958,758 + -1.1 958,759 - +0.1 958,759 - +0.1 958,759 - +0.2 958,877 - -0.5 958,878 + +0.2 958,878 + +0.9 958,878 + +0.9 958,879 - -0.1 958,879 - +0.1 958,879 - +0.0 958,879 - -0.3 958,879 - -0.3 958,902 + +0.7 959,028 + +0.2 959,028 + +2.3 959,028 + -1.2 959,029 - +0.1 959,029 - +1.2 959,048 + +0.2 959,049 - -0.9 959,065 + +0.3 959,099 - +0.7 959,099 - +0.1 959,137 - +0.7 959,165 + +0.7 959,165 + -0.1 959,165 + +0.6 959,166 - -2.2 959,166 - +1.5 959,166 - +0.1 959,246 + -1.5 959,246 + -0.3 959,246 + +0.3 959,246 + +0.8 959,246 + -0.9 959,247 - -2.8 959,247 - +0.0 959,247 - -0.0 959,284 + -2.3 959,285 - +0.5 959,285 - -0.3 959,285 - -1.1 959,288 + +0.1 959,332 + IAI46_04470 0.12 +0.3 959,471 - IAI46_04470 0.21 +0.6 959,514 + IAI46_04470 0.23 -2.5 959,515 - IAI46_04470 0.24 +0.1 959,720 - IAI46_04470 0.36 +0.5 959,804 + IAI46_04470 0.42 -0.2 959,804 + IAI46_04470 0.42 +0.2 959,804 + IAI46_04470 0.42 -0.0 959,805 - IAI46_04470 0.42 -0.1 959,807 + IAI46_04470 0.42 -0.1 960,217 - IAI46_04470 0.67 +0.1 960,240 + IAI46_04470 0.69 -0.3 960,240 + IAI46_04470 0.69 -1.0 960,245 + IAI46_04470 0.69 +0.9 960,245 + IAI46_04470 0.69 -1.3 960,340 + IAI46_04470 0.75 -0.2 960,341 - IAI46_04470 0.75 -0.1 960,341 - IAI46_04470 0.75 -0.1 960,406 + IAI46_04470 0.79 +0.6 960,406 + IAI46_04470 0.79 +0.6 960,407 - IAI46_04470 0.79 -0.0 960,577 + IAI46_04470 0.90 +1.2 960,577 + IAI46_04470 0.90 +0.3 960,578 - IAI46_04470 0.90 +0.9 960,591 + -0.0 960,592 - +0.2 960,592 - +1.2 960,644 - +0.2 960,644 - -1.1 960,654 + -0.5 960,655 - +0.1 960,701 + -0.4 960,702 - -1.3 960,773 + -1.3 960,906 - +0.3 961,058 + -1.1 961,096 + -0.4 961,136 + -0.6 961,136 + +1.2 961,136 + -1.4 961,137 - -0.3 961,137 - -0.8 961,190 - -0.5 961,193 + -0.6 961,194 - -0.1 961,194 - +0.4 961,239 + -1.0 961,240 - +0.5 961,240 - +0.2 961,245 + +0.3 961,245 + -0.7 961,245 + +0.2 961,245 + -1.0 961,246 - +0.2 961,246 - +0.6 961,355 + -0.4 961,355 + -0.6 961,355 + +0.9 961,422 + +1.0 961,423 - +0.5 961,428 + -0.1 961,537 - IAI46_04475 0.14 +0.7 961,672 - IAI46_04475 0.20 +0.0 961,723 + IAI46_04475 0.22 -0.0 961,723 + IAI46_04475 0.22 +0.8 961,739 - IAI46_04475 0.23 -1.1
Or see this region's nucleotide sequence