Experiment: Nickel (II) chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03920 and IAI46_03925 are separated by 18 nucleotides IAI46_03925 and IAI46_03930 are separated by 52 nucleotides IAI46_03930 and IAI46_03935 are separated by 54 nucleotides IAI46_03935 and IAI46_03940 are separated by 159 nucleotides
IAI46_03920: IAI46_03920 - 30S ribosomal protein S16, at 850,105 to 850,353
_03920
IAI46_03925: IAI46_03925 - ribosome maturation factor RimM, at 850,372 to 850,920
_03925
IAI46_03930: IAI46_03930 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 850,973 to 851,740
_03930
IAI46_03935: IAI46_03935 - 50S ribosomal protein L19, at 851,795 to 852,151
_03935
IAI46_03940: IAI46_03940 - DNA-binding transcriptional regulator, at 852,311 to 852,529
_03940
Position (kb) 850
851
852 Strain fitness (log2 ratio) -2
-1
0
1
2 at 849.990 kb on - strand at 849.996 kb on + strand at 849.997 kb on - strand at 849.997 kb on - strand at 852.273 kb on - strand at 852.280 kb on + strand at 852.312 kb on + strand at 852.380 kb on + strand, within IAI46_03940 at 852.381 kb on - strand, within IAI46_03940 at 852.381 kb on - strand, within IAI46_03940 at 852.418 kb on + strand, within IAI46_03940 at 852.430 kb on + strand, within IAI46_03940 at 852.478 kb on - strand, within IAI46_03940 at 852.493 kb on + strand, within IAI46_03940 at 852.529 kb on + strand at 852.530 kb on - strand at 852.547 kb on - strand at 852.574 kb on - strand at 852.574 kb on - strand at 852.574 kb on - strand at 852.606 kb on + strand at 852.617 kb on + strand at 852.618 kb on - strand at 852.618 kb on - strand at 852.629 kb on + strand at 852.630 kb on - strand at 852.651 kb on + strand at 852.651 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic remove 849,990 - +0.8 849,996 + -0.6 849,997 - -1.7 849,997 - -1.3 852,273 - +0.2 852,280 + +0.4 852,312 + +0.7 852,380 + IAI46_03940 0.32 -2.2 852,381 - IAI46_03940 0.32 +0.2 852,381 - IAI46_03940 0.32 +0.1 852,418 + IAI46_03940 0.49 +1.1 852,430 + IAI46_03940 0.54 +0.9 852,478 - IAI46_03940 0.76 +0.7 852,493 + IAI46_03940 0.83 +0.1 852,529 + -0.8 852,530 - +0.1 852,547 - +0.6 852,574 - +0.3 852,574 - -1.1 852,574 - -1.6 852,606 + +0.5 852,617 + -0.9 852,618 - +0.6 852,618 - +2.2 852,629 + +0.2 852,630 - -1.2 852,651 + -0.8 852,651 + -0.3
Or see this region's nucleotide sequence