Strain Fitness in Serratia liquefaciens MT49 around IAI46_03910

Experiment: Nickel (II) chloride 80 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_03905 and IAI46_03910 are separated by 40 nucleotidesIAI46_03910 and IAI46_03915 are separated by 169 nucleotides IAI46_03905: IAI46_03905 - HlyC/CorC family transporter, at 846,236 to 847,525 _03905 IAI46_03910: IAI46_03910 - inner membrane protein YpjD, at 847,566 to 848,357 _03910 IAI46_03915: IAI46_03915 - signal recognition particle protein, at 848,527 to 849,888 _03915 Position (kb) 847 848 849Strain fitness (log2 ratio) -2 -1 0 1 2at 846.601 kb on - strand, within IAI46_03905at 846.684 kb on + strand, within IAI46_03905at 846.685 kb on - strand, within IAI46_03905at 846.687 kb on + strand, within IAI46_03905at 846.765 kb on - strand, within IAI46_03905at 846.835 kb on + strand, within IAI46_03905at 846.836 kb on - strand, within IAI46_03905at 846.836 kb on - strand, within IAI46_03905at 846.904 kb on + strand, within IAI46_03905at 846.904 kb on + strand, within IAI46_03905at 846.904 kb on + strand, within IAI46_03905at 846.905 kb on - strand, within IAI46_03905at 846.905 kb on - strand, within IAI46_03905at 846.905 kb on - strand, within IAI46_03905at 846.905 kb on - strand, within IAI46_03905at 847.168 kb on - strand, within IAI46_03905at 847.226 kb on + strand, within IAI46_03905at 847.315 kb on + strand, within IAI46_03905at 847.315 kb on + strand, within IAI46_03905at 847.337 kb on + strand, within IAI46_03905at 847.337 kb on + strand, within IAI46_03905at 847.338 kb on - strand, within IAI46_03905at 847.338 kb on - strand, within IAI46_03905at 847.461 kb on + strandat 847.493 kb on - strandat 847.538 kb on + strandat 847.538 kb on + strandat 847.539 kb on - strandat 847.539 kb on - strandat 847.539 kb on - strandat 847.539 kb on - strandat 847.539 kb on - strandat 847.542 kb on + strandat 847.543 kb on - strandat 847.543 kb on - strandat 847.543 kb on - strandat 847.567 kb on + strandat 847.568 kb on - strandat 847.607 kb on - strandat 847.678 kb on + strand, within IAI46_03910at 847.700 kb on + strand, within IAI46_03910at 847.701 kb on - strand, within IAI46_03910at 847.701 kb on - strand, within IAI46_03910at 847.702 kb on + strand, within IAI46_03910at 847.702 kb on + strand, within IAI46_03910at 847.703 kb on - strand, within IAI46_03910at 847.722 kb on - strand, within IAI46_03910at 847.722 kb on - strand, within IAI46_03910at 847.722 kb on - strand, within IAI46_03910at 847.769 kb on + strand, within IAI46_03910at 847.770 kb on - strand, within IAI46_03910at 847.771 kb on + strand, within IAI46_03910at 847.771 kb on + strand, within IAI46_03910at 847.771 kb on + strand, within IAI46_03910at 847.772 kb on - strand, within IAI46_03910at 847.772 kb on - strand, within IAI46_03910at 847.815 kb on + strand, within IAI46_03910at 847.930 kb on + strand, within IAI46_03910at 847.931 kb on - strand, within IAI46_03910at 847.931 kb on - strand, within IAI46_03910at 847.953 kb on - strand, within IAI46_03910at 847.957 kb on + strand, within IAI46_03910at 847.957 kb on + strand, within IAI46_03910at 847.980 kb on - strand, within IAI46_03910at 848.015 kb on + strand, within IAI46_03910at 848.033 kb on + strand, within IAI46_03910at 848.033 kb on + strand, within IAI46_03910at 848.071 kb on + strand, within IAI46_03910at 848.157 kb on + strand, within IAI46_03910at 848.157 kb on + strand, within IAI46_03910at 848.157 kb on + strand, within IAI46_03910at 848.158 kb on - strand, within IAI46_03910at 848.158 kb on - strand, within IAI46_03910at 848.158 kb on - strand, within IAI46_03910at 848.201 kb on + strand, within IAI46_03910at 848.269 kb on + strand, within IAI46_03910at 848.323 kb on + strandat 848.357 kb on + strandat 848.357 kb on + strandat 848.401 kb on + strandat 848.402 kb on - strandat 848.402 kb on - strandat 848.402 kb on - strandat 848.468 kb on + strandat 848.507 kb on + strandat 848.507 kb on + strandat 848.507 kb on + strandat 848.507 kb on + strandat 848.507 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
remove
846,601 - IAI46_03905 0.28 +0.0
846,684 + IAI46_03905 0.35 +0.4
846,685 - IAI46_03905 0.35 +1.0
846,687 + IAI46_03905 0.35 -0.5
846,765 - IAI46_03905 0.41 +0.1
846,835 + IAI46_03905 0.46 +1.9
846,836 - IAI46_03905 0.47 +0.3
846,836 - IAI46_03905 0.47 +0.5
846,904 + IAI46_03905 0.52 +0.4
846,904 + IAI46_03905 0.52 +0.2
846,904 + IAI46_03905 0.52 +0.1
846,905 - IAI46_03905 0.52 -0.6
846,905 - IAI46_03905 0.52 +0.4
846,905 - IAI46_03905 0.52 +0.3
846,905 - IAI46_03905 0.52 +0.1
847,168 - IAI46_03905 0.72 -0.4
847,226 + IAI46_03905 0.77 +0.7
847,315 + IAI46_03905 0.84 +0.5
847,315 + IAI46_03905 0.84 +0.2
847,337 + IAI46_03905 0.85 -0.4
847,337 + IAI46_03905 0.85 +0.6
847,338 - IAI46_03905 0.85 +1.3
847,338 - IAI46_03905 0.85 +0.3
847,461 + +0.3
847,493 - +0.0
847,538 + +0.7
847,538 + +0.9
847,539 - +0.8
847,539 - -0.1
847,539 - +1.1
847,539 - +0.9
847,539 - +1.4
847,542 + -0.7
847,543 - -0.1
847,543 - +1.1
847,543 - +0.3
847,567 + +0.0
847,568 - +0.1
847,607 - +0.3
847,678 + IAI46_03910 0.14 +1.2
847,700 + IAI46_03910 0.17 +0.3
847,701 - IAI46_03910 0.17 +1.6
847,701 - IAI46_03910 0.17 +0.6
847,702 + IAI46_03910 0.17 -1.5
847,702 + IAI46_03910 0.17 +0.5
847,703 - IAI46_03910 0.17 -1.1
847,722 - IAI46_03910 0.20 -0.6
847,722 - IAI46_03910 0.20 -0.4
847,722 - IAI46_03910 0.20 -0.0
847,769 + IAI46_03910 0.26 -0.1
847,770 - IAI46_03910 0.26 +1.7
847,771 + IAI46_03910 0.26 -1.4
847,771 + IAI46_03910 0.26 +1.5
847,771 + IAI46_03910 0.26 -0.6
847,772 - IAI46_03910 0.26 +0.0
847,772 - IAI46_03910 0.26 +0.9
847,815 + IAI46_03910 0.31 -0.0
847,930 + IAI46_03910 0.46 -0.4
847,931 - IAI46_03910 0.46 -0.3
847,931 - IAI46_03910 0.46 +0.9
847,953 - IAI46_03910 0.49 -0.7
847,957 + IAI46_03910 0.49 -1.8
847,957 + IAI46_03910 0.49 +0.3
847,980 - IAI46_03910 0.52 -0.2
848,015 + IAI46_03910 0.57 -1.1
848,033 + IAI46_03910 0.59 -0.7
848,033 + IAI46_03910 0.59 +0.9
848,071 + IAI46_03910 0.64 -0.5
848,157 + IAI46_03910 0.75 -0.7
848,157 + IAI46_03910 0.75 +0.7
848,157 + IAI46_03910 0.75 +0.4
848,158 - IAI46_03910 0.75 -0.1
848,158 - IAI46_03910 0.75 +0.8
848,158 - IAI46_03910 0.75 -0.4
848,201 + IAI46_03910 0.80 +1.2
848,269 + IAI46_03910 0.89 -0.3
848,323 + +1.2
848,357 + -0.3
848,357 + +0.1
848,401 + +0.5
848,402 - -0.3
848,402 - -1.1
848,402 - +0.3
848,468 + +0.1
848,507 + -1.4
848,507 + +1.0
848,507 + +0.9
848,507 + -1.6
848,507 + -1.6

Or see this region's nucleotide sequence