Strain Fitness in Serratia liquefaciens MT49 around IAI46_03585

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03580 and IAI46_03585 are separated by 190 nucleotidesIAI46_03585 and IAI46_03590 are separated by 221 nucleotides IAI46_03580: IAI46_03580 - dGTPase, at 773,203 to 774,720 _03580 IAI46_03585: IAI46_03585 - serine endoprotease DegP, at 774,911 to 776,350 _03585 IAI46_03590: IAI46_03590 - two-component sensor histidine kinase BarA, at 776,572 to 779,304 _03590 Position (kb) 774 775 776 777Strain fitness (log2 ratio) -2 -1 0 1at 773.956 kb on - strand, within IAI46_03580at 773.986 kb on + strand, within IAI46_03580at 773.986 kb on + strand, within IAI46_03580at 773.987 kb on - strand, within IAI46_03580at 773.987 kb on - strand, within IAI46_03580at 773.987 kb on - strand, within IAI46_03580at 773.987 kb on - strand, within IAI46_03580at 773.988 kb on + strand, within IAI46_03580at 773.988 kb on + strand, within IAI46_03580at 773.988 kb on + strand, within IAI46_03580at 773.988 kb on + strand, within IAI46_03580at 773.989 kb on - strand, within IAI46_03580at 773.989 kb on - strand, within IAI46_03580at 773.989 kb on - strand, within IAI46_03580at 773.989 kb on - strand, within IAI46_03580at 773.991 kb on + strand, within IAI46_03580at 773.991 kb on + strand, within IAI46_03580at 773.991 kb on + strand, within IAI46_03580at 773.992 kb on - strand, within IAI46_03580at 774.017 kb on - strand, within IAI46_03580at 774.076 kb on + strand, within IAI46_03580at 774.086 kb on + strand, within IAI46_03580at 774.087 kb on - strand, within IAI46_03580at 774.087 kb on - strand, within IAI46_03580at 774.107 kb on + strand, within IAI46_03580at 774.205 kb on + strand, within IAI46_03580at 774.205 kb on + strand, within IAI46_03580at 774.210 kb on - strand, within IAI46_03580at 774.258 kb on + strand, within IAI46_03580at 774.258 kb on + strand, within IAI46_03580at 774.264 kb on + strand, within IAI46_03580at 774.328 kb on + strand, within IAI46_03580at 774.328 kb on + strand, within IAI46_03580at 774.438 kb on + strand, within IAI46_03580at 774.439 kb on - strand, within IAI46_03580at 774.442 kb on + strand, within IAI46_03580at 774.442 kb on + strand, within IAI46_03580at 774.442 kb on + strand, within IAI46_03580at 774.443 kb on - strand, within IAI46_03580at 774.443 kb on - strand, within IAI46_03580at 774.443 kb on - strand, within IAI46_03580at 774.511 kb on + strand, within IAI46_03580at 774.519 kb on - strand, within IAI46_03580at 774.565 kb on + strand, within IAI46_03580at 774.565 kb on + strand, within IAI46_03580at 774.566 kb on - strand, within IAI46_03580at 774.566 kb on - strand, within IAI46_03580at 774.566 kb on - strand, within IAI46_03580at 774.566 kb on - strand, within IAI46_03580at 774.629 kb on - strandat 774.629 kb on - strandat 774.655 kb on + strandat 774.680 kb on - strandat 774.685 kb on + strandat 774.685 kb on + strandat 774.735 kb on - strandat 774.738 kb on + strandat 774.739 kb on - strandat 774.746 kb on + strandat 774.800 kb on + strandat 774.800 kb on + strandat 774.809 kb on - strandat 774.812 kb on - strandat 774.812 kb on - strandat 774.815 kb on - strandat 774.815 kb on - strandat 774.820 kb on + strandat 774.847 kb on - strandat 774.847 kb on - strandat 774.847 kb on - strandat 774.849 kb on + strandat 774.849 kb on + strandat 774.860 kb on + strandat 774.861 kb on - strandat 774.861 kb on - strandat 774.875 kb on + strandat 774.878 kb on + strandat 774.878 kb on + strandat 774.879 kb on - strandat 774.879 kb on - strandat 774.927 kb on + strandat 774.927 kb on + strandat 774.927 kb on + strandat 775.072 kb on + strand, within IAI46_03585at 775.072 kb on + strand, within IAI46_03585at 775.072 kb on + strand, within IAI46_03585at 775.072 kb on + strand, within IAI46_03585at 775.073 kb on - strand, within IAI46_03585at 775.073 kb on - strand, within IAI46_03585at 775.073 kb on - strand, within IAI46_03585at 775.293 kb on - strand, within IAI46_03585at 775.429 kb on + strand, within IAI46_03585at 775.430 kb on - strand, within IAI46_03585at 775.485 kb on - strand, within IAI46_03585at 775.485 kb on - strand, within IAI46_03585at 775.509 kb on - strand, within IAI46_03585at 775.571 kb on - strand, within IAI46_03585at 775.622 kb on - strand, within IAI46_03585at 775.669 kb on + strand, within IAI46_03585at 775.766 kb on + strand, within IAI46_03585at 775.766 kb on + strand, within IAI46_03585at 775.798 kb on + strand, within IAI46_03585at 775.798 kb on + strand, within IAI46_03585at 775.798 kb on + strand, within IAI46_03585at 775.799 kb on - strand, within IAI46_03585at 775.799 kb on - strand, within IAI46_03585at 776.053 kb on + strand, within IAI46_03585at 776.054 kb on - strand, within IAI46_03585at 776.095 kb on + strand, within IAI46_03585at 776.163 kb on + strand, within IAI46_03585at 776.163 kb on + strand, within IAI46_03585at 776.164 kb on - strand, within IAI46_03585at 776.164 kb on - strand, within IAI46_03585at 776.164 kb on - strand, within IAI46_03585at 776.164 kb on - strand, within IAI46_03585at 776.167 kb on + strand, within IAI46_03585at 776.167 kb on + strand, within IAI46_03585at 776.167 kb on + strand, within IAI46_03585at 776.168 kb on - strand, within IAI46_03585at 776.334 kb on - strandat 776.348 kb on + strandat 776.349 kb on - strandat 776.451 kb on - strandat 776.451 kb on - strandat 776.459 kb on - strandat 776.512 kb on + strandat 776.512 kb on + strandat 776.543 kb on + strandat 776.543 kb on + strandat 776.559 kb on - strandat 776.569 kb on - strandat 776.688 kb on - strandat 776.723 kb on + strandat 776.723 kb on + strandat 776.723 kb on + strandat 776.724 kb on - strandat 776.724 kb on - strandat 776.842 kb on + strandat 776.842 kb on + strandat 777.017 kb on + strand, within IAI46_03590at 777.018 kb on - strand, within IAI46_03590at 777.018 kb on - strand, within IAI46_03590at 777.018 kb on - strand, within IAI46_03590at 777.018 kb on - strand, within IAI46_03590at 777.291 kb on + strand, within IAI46_03590at 777.327 kb on + strand, within IAI46_03590

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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773,956 - IAI46_03580 0.50 +0.5
773,986 + IAI46_03580 0.52 -0.3
773,986 + IAI46_03580 0.52 -0.6
773,987 - IAI46_03580 0.52 +0.1
773,987 - IAI46_03580 0.52 +1.0
773,987 - IAI46_03580 0.52 +0.7
773,987 - IAI46_03580 0.52 -0.0
773,988 + IAI46_03580 0.52 +0.1
773,988 + IAI46_03580 0.52 -0.4
773,988 + IAI46_03580 0.52 +0.1
773,988 + IAI46_03580 0.52 -0.2
773,989 - IAI46_03580 0.52 -1.4
773,989 - IAI46_03580 0.52 -0.2
773,989 - IAI46_03580 0.52 -0.1
773,989 - IAI46_03580 0.52 +0.3
773,991 + IAI46_03580 0.52 +0.4
773,991 + IAI46_03580 0.52 +0.1
773,991 + IAI46_03580 0.52 +1.7
773,992 - IAI46_03580 0.52 +0.3
774,017 - IAI46_03580 0.54 +0.7
774,076 + IAI46_03580 0.58 +0.3
774,086 + IAI46_03580 0.58 +0.4
774,087 - IAI46_03580 0.58 -0.2
774,087 - IAI46_03580 0.58 +0.3
774,107 + IAI46_03580 0.60 +0.2
774,205 + IAI46_03580 0.66 +0.5
774,205 + IAI46_03580 0.66 -0.2
774,210 - IAI46_03580 0.66 +0.5
774,258 + IAI46_03580 0.69 -0.2
774,258 + IAI46_03580 0.69 +0.0
774,264 + IAI46_03580 0.70 -2.0
774,328 + IAI46_03580 0.74 +0.8
774,328 + IAI46_03580 0.74 +1.3
774,438 + IAI46_03580 0.81 -0.3
774,439 - IAI46_03580 0.81 -0.3
774,442 + IAI46_03580 0.82 -0.5
774,442 + IAI46_03580 0.82 -0.8
774,442 + IAI46_03580 0.82 +0.1
774,443 - IAI46_03580 0.82 -2.3
774,443 - IAI46_03580 0.82 -0.7
774,443 - IAI46_03580 0.82 -0.9
774,511 + IAI46_03580 0.86 -0.3
774,519 - IAI46_03580 0.87 +0.4
774,565 + IAI46_03580 0.90 -0.0
774,565 + IAI46_03580 0.90 -0.4
774,566 - IAI46_03580 0.90 +0.6
774,566 - IAI46_03580 0.90 +0.8
774,566 - IAI46_03580 0.90 +0.9
774,566 - IAI46_03580 0.90 +0.2
774,629 - +0.4
774,629 - +1.7
774,655 + +0.7
774,680 - +0.4
774,685 + +0.4
774,685 + -0.3
774,735 - +0.3
774,738 + +0.2
774,739 - -1.0
774,746 + -1.1
774,800 + -0.3
774,800 + +0.7
774,809 - +0.8
774,812 - -0.7
774,812 - +0.8
774,815 - +0.4
774,815 - -0.3
774,820 + +1.1
774,847 - +0.9
774,847 - +0.2
774,847 - +0.5
774,849 + +1.3
774,849 + +0.0
774,860 + +0.3
774,861 - -0.6
774,861 - +0.0
774,875 + -1.5
774,878 + -0.9
774,878 + -0.2
774,879 - +0.2
774,879 - +0.3
774,927 + +0.4
774,927 + -1.9
774,927 + +0.7
775,072 + IAI46_03585 0.11 +0.1
775,072 + IAI46_03585 0.11 +0.4
775,072 + IAI46_03585 0.11 +0.8
775,072 + IAI46_03585 0.11 -0.3
775,073 - IAI46_03585 0.11 -0.1
775,073 - IAI46_03585 0.11 -1.0
775,073 - IAI46_03585 0.11 +0.5
775,293 - IAI46_03585 0.27 +0.9
775,429 + IAI46_03585 0.36 +0.2
775,430 - IAI46_03585 0.36 +0.2
775,485 - IAI46_03585 0.40 -0.7
775,485 - IAI46_03585 0.40 +0.1
775,509 - IAI46_03585 0.42 +1.5
775,571 - IAI46_03585 0.46 -0.8
775,622 - IAI46_03585 0.49 -0.2
775,669 + IAI46_03585 0.53 +0.7
775,766 + IAI46_03585 0.59 -0.0
775,766 + IAI46_03585 0.59 -0.2
775,798 + IAI46_03585 0.62 +0.2
775,798 + IAI46_03585 0.62 -2.4
775,798 + IAI46_03585 0.62 -0.0
775,799 - IAI46_03585 0.62 -1.8
775,799 - IAI46_03585 0.62 -0.8
776,053 + IAI46_03585 0.79 -0.1
776,054 - IAI46_03585 0.79 +0.5
776,095 + IAI46_03585 0.82 -0.9
776,163 + IAI46_03585 0.87 +0.9
776,163 + IAI46_03585 0.87 +0.2
776,164 - IAI46_03585 0.87 +0.8
776,164 - IAI46_03585 0.87 -0.0
776,164 - IAI46_03585 0.87 +0.5
776,164 - IAI46_03585 0.87 +0.6
776,167 + IAI46_03585 0.87 +1.0
776,167 + IAI46_03585 0.87 -0.5
776,167 + IAI46_03585 0.87 -1.1
776,168 - IAI46_03585 0.87 +0.5
776,334 - -0.7
776,348 + -0.7
776,349 - -0.6
776,451 - +0.6
776,451 - +1.5
776,459 - +0.9
776,512 + -0.2
776,512 + +0.7
776,543 + +0.0
776,543 + -1.2
776,559 - -0.6
776,569 - -1.3
776,688 - -0.8
776,723 + -0.8
776,723 + +0.1
776,723 + -0.1
776,724 - -0.3
776,724 - +0.6
776,842 + +0.3
776,842 + +0.3
777,017 + IAI46_03590 0.16 +0.6
777,018 - IAI46_03590 0.16 -0.3
777,018 - IAI46_03590 0.16 -0.5
777,018 - IAI46_03590 0.16 +0.3
777,018 - IAI46_03590 0.16 -0.8
777,291 + IAI46_03590 0.26 -0.3
777,327 + IAI46_03590 0.28 +0.2

Or see this region's nucleotide sequence