Strain Fitness in Serratia liquefaciens MT49 around IAI46_03390

Experiment: Nickel (II) chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03385 and IAI46_03390 are separated by 46 nucleotidesIAI46_03390 and IAI46_03395 are separated by 869 nucleotides IAI46_03385: IAI46_03385 - catabolite repressor/activator, at 733,445 to 734,449 _03385 IAI46_03390: IAI46_03390 - L-alanine exporter AlaE, at 734,496 to 734,936 _03390 IAI46_03395: IAI46_03395 - division/cell wall cluster transcriptional repressor MraZ, at 735,806 to 736,264 _03395 Position (kb) 734 735Strain fitness (log2 ratio) -2 -1 0 1 2at 733.499 kb on + strandat 733.499 kb on + strandat 733.527 kb on - strandat 733.541 kb on - strandat 733.583 kb on + strand, within IAI46_03385at 733.583 kb on + strand, within IAI46_03385at 733.584 kb on - strand, within IAI46_03385at 733.584 kb on - strand, within IAI46_03385at 733.584 kb on - strand, within IAI46_03385at 733.670 kb on + strand, within IAI46_03385at 733.671 kb on - strand, within IAI46_03385at 733.671 kb on - strand, within IAI46_03385at 733.688 kb on + strand, within IAI46_03385at 733.688 kb on + strand, within IAI46_03385at 733.688 kb on + strand, within IAI46_03385at 733.689 kb on - strand, within IAI46_03385at 733.689 kb on - strand, within IAI46_03385at 733.689 kb on - strand, within IAI46_03385at 733.876 kb on + strand, within IAI46_03385at 733.969 kb on + strand, within IAI46_03385at 733.969 kb on + strand, within IAI46_03385at 733.994 kb on + strand, within IAI46_03385at 733.994 kb on + strand, within IAI46_03385at 733.994 kb on + strand, within IAI46_03385at 734.085 kb on - strand, within IAI46_03385at 734.091 kb on - strand, within IAI46_03385at 734.098 kb on + strand, within IAI46_03385at 734.098 kb on + strand, within IAI46_03385at 734.098 kb on + strand, within IAI46_03385at 734.098 kb on + strand, within IAI46_03385at 734.098 kb on + strand, within IAI46_03385at 734.099 kb on - strand, within IAI46_03385at 734.099 kb on - strand, within IAI46_03385at 734.099 kb on - strand, within IAI46_03385at 734.102 kb on + strand, within IAI46_03385at 734.102 kb on + strand, within IAI46_03385at 734.102 kb on + strand, within IAI46_03385at 734.343 kb on + strand, within IAI46_03385at 734.343 kb on + strand, within IAI46_03385at 734.386 kb on + strandat 734.448 kb on - strandat 734.454 kb on - strandat 734.455 kb on + strandat 734.497 kb on + strandat 734.499 kb on + strandat 734.499 kb on + strandat 734.499 kb on + strandat 734.500 kb on - strandat 734.500 kb on - strandat 734.500 kb on - strandat 734.503 kb on + strandat 734.503 kb on + strandat 734.504 kb on - strandat 734.534 kb on - strandat 734.552 kb on - strand, within IAI46_03390at 734.552 kb on - strand, within IAI46_03390at 734.602 kb on - strand, within IAI46_03390at 734.647 kb on + strand, within IAI46_03390at 734.671 kb on + strand, within IAI46_03390at 734.672 kb on - strand, within IAI46_03390at 734.672 kb on - strand, within IAI46_03390at 734.672 kb on - strand, within IAI46_03390at 734.701 kb on - strand, within IAI46_03390at 734.780 kb on + strand, within IAI46_03390at 734.782 kb on + strand, within IAI46_03390at 734.875 kb on + strand, within IAI46_03390at 734.875 kb on + strand, within IAI46_03390at 734.876 kb on - strand, within IAI46_03390at 734.876 kb on - strand, within IAI46_03390at 734.876 kb on - strand, within IAI46_03390at 734.876 kb on - strand, within IAI46_03390at 734.925 kb on - strandat 735.019 kb on - strandat 735.019 kb on - strandat 735.045 kb on + strandat 735.045 kb on + strandat 735.045 kb on + strandat 735.049 kb on + strandat 735.049 kb on + strandat 735.050 kb on - strandat 735.050 kb on - strandat 735.050 kb on - strandat 735.054 kb on + strandat 735.054 kb on + strandat 735.054 kb on + strandat 735.220 kb on - strandat 735.220 kb on - strandat 735.227 kb on + strandat 735.227 kb on + strandat 735.228 kb on - strandat 735.228 kb on - strandat 735.244 kb on - strandat 735.244 kb on - strandat 735.268 kb on + strandat 735.268 kb on + strandat 735.311 kb on - strandat 735.311 kb on - strandat 735.358 kb on - strandat 735.358 kb on - strandat 735.358 kb on - strandat 735.366 kb on + strandat 735.366 kb on + strandat 735.367 kb on - strandat 735.371 kb on + strandat 735.403 kb on - strandat 735.403 kb on - strandat 735.408 kb on - strandat 735.423 kb on + strandat 735.442 kb on - strandat 735.541 kb on + strandat 735.541 kb on + strandat 735.542 kb on - strandat 735.550 kb on - strandat 735.639 kb on + strandat 735.639 kb on + strandat 735.640 kb on - strandat 735.642 kb on + strandat 735.647 kb on - strandat 735.749 kb on + strandat 735.749 kb on + strandat 735.805 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, aerobic
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733,499 + +1.9
733,499 + +0.3
733,527 - +0.5
733,541 - -0.1
733,583 + IAI46_03385 0.14 +1.0
733,583 + IAI46_03385 0.14 +0.0
733,584 - IAI46_03385 0.14 -2.2
733,584 - IAI46_03385 0.14 -0.5
733,584 - IAI46_03385 0.14 +1.1
733,670 + IAI46_03385 0.22 +0.7
733,671 - IAI46_03385 0.22 +1.9
733,671 - IAI46_03385 0.22 -0.0
733,688 + IAI46_03385 0.24 -0.5
733,688 + IAI46_03385 0.24 -0.1
733,688 + IAI46_03385 0.24 +0.1
733,689 - IAI46_03385 0.24 -2.5
733,689 - IAI46_03385 0.24 -1.7
733,689 - IAI46_03385 0.24 +1.4
733,876 + IAI46_03385 0.43 +1.2
733,969 + IAI46_03385 0.52 -2.1
733,969 + IAI46_03385 0.52 -0.0
733,994 + IAI46_03385 0.55 -0.5
733,994 + IAI46_03385 0.55 +1.1
733,994 + IAI46_03385 0.55 +1.3
734,085 - IAI46_03385 0.64 -0.9
734,091 - IAI46_03385 0.64 -0.0
734,098 + IAI46_03385 0.65 -0.4
734,098 + IAI46_03385 0.65 +0.5
734,098 + IAI46_03385 0.65 +1.3
734,098 + IAI46_03385 0.65 +0.9
734,098 + IAI46_03385 0.65 +0.4
734,099 - IAI46_03385 0.65 -0.6
734,099 - IAI46_03385 0.65 -1.2
734,099 - IAI46_03385 0.65 -0.3
734,102 + IAI46_03385 0.65 -0.3
734,102 + IAI46_03385 0.65 -0.7
734,102 + IAI46_03385 0.65 -0.2
734,343 + IAI46_03385 0.89 -0.8
734,343 + IAI46_03385 0.89 +0.4
734,386 + -1.3
734,448 - +0.2
734,454 - -0.1
734,455 + +0.5
734,497 + +0.3
734,499 + -0.6
734,499 + -0.8
734,499 + -0.1
734,500 - -0.0
734,500 - +0.1
734,500 - +0.2
734,503 + +0.6
734,503 + +0.1
734,504 - -0.9
734,534 - -0.2
734,552 - IAI46_03390 0.13 +0.4
734,552 - IAI46_03390 0.13 +1.2
734,602 - IAI46_03390 0.24 +0.0
734,647 + IAI46_03390 0.34 -0.4
734,671 + IAI46_03390 0.40 -1.4
734,672 - IAI46_03390 0.40 +0.0
734,672 - IAI46_03390 0.40 -0.3
734,672 - IAI46_03390 0.40 +1.0
734,701 - IAI46_03390 0.46 +0.1
734,780 + IAI46_03390 0.64 +0.3
734,782 + IAI46_03390 0.65 +1.6
734,875 + IAI46_03390 0.86 -0.1
734,875 + IAI46_03390 0.86 -0.9
734,876 - IAI46_03390 0.86 +1.4
734,876 - IAI46_03390 0.86 +0.2
734,876 - IAI46_03390 0.86 +0.3
734,876 - IAI46_03390 0.86 +0.4
734,925 - +0.4
735,019 - +1.0
735,019 - +0.9
735,045 + +1.1
735,045 + +1.6
735,045 + -0.2
735,049 + +0.2
735,049 + +0.8
735,050 - +0.3
735,050 - +0.1
735,050 - +0.5
735,054 + -0.3
735,054 + +0.7
735,054 + +0.6
735,220 - -0.3
735,220 - -0.6
735,227 + +0.4
735,227 + -1.4
735,228 - -0.4
735,228 - +0.9
735,244 - +2.3
735,244 - +0.6
735,268 + +1.4
735,268 + +0.4
735,311 - +0.6
735,311 - +0.4
735,358 - -0.7
735,358 - +0.2
735,358 - -0.6
735,366 + -0.8
735,366 + -0.6
735,367 - +0.1
735,371 + +0.2
735,403 - -0.4
735,403 - +0.4
735,408 - -0.5
735,423 + -0.2
735,442 - +0.8
735,541 + +0.0
735,541 + -2.5
735,542 - +0.0
735,550 - -0.1
735,639 + +0.2
735,639 + -0.2
735,640 - +0.4
735,642 + +0.3
735,647 - -0.6
735,749 + +0.3
735,749 + -0.2
735,805 + +0.6

Or see this region's nucleotide sequence